miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24608 5' -55.4 NC_005264.1 + 85043 0.66 0.927578
Target:  5'- -cGUCaAUGccGUCUGCGCCGCgguGCg -3'
miRNA:   3'- aaUAG-UACcaCAGGCGCGGCGaguCG- -5'
24608 5' -55.4 NC_005264.1 + 139546 0.66 0.927578
Target:  5'- --cUCGUGGcgaUGUuuGCGCuCGCUgCAcGCg -3'
miRNA:   3'- aauAGUACC---ACAggCGCG-GCGA-GU-CG- -5'
24608 5' -55.4 NC_005264.1 + 98273 0.66 0.922106
Target:  5'- ----aAUGGacgUGUUCGCGCUGggCAGCg -3'
miRNA:   3'- aauagUACC---ACAGGCGCGGCgaGUCG- -5'
24608 5' -55.4 NC_005264.1 + 70662 0.66 0.916389
Target:  5'- ---cCGUGGccgCgGCGCCGC-CGGCa -3'
miRNA:   3'- aauaGUACCacaGgCGCGGCGaGUCG- -5'
24608 5' -55.4 NC_005264.1 + 46621 0.66 0.916389
Target:  5'- -cGUCGUGG-GaCCGCGUgGCcgaagaauUCGGCa -3'
miRNA:   3'- aaUAGUACCaCaGGCGCGgCG--------AGUCG- -5'
24608 5' -55.4 NC_005264.1 + 90128 0.66 0.915804
Target:  5'- -gAUCGggGGUGUCCcaggcaaagcauuGCGCCGCgUCAc- -3'
miRNA:   3'- aaUAGUa-CCACAGG-------------CGCGGCG-AGUcg -5'
24608 5' -55.4 NC_005264.1 + 52780 0.66 0.914627
Target:  5'- -gGUCGUGGUacucgcguacugucGcuugCCGCGCCGCU--GCa -3'
miRNA:   3'- aaUAGUACCA--------------Ca---GGCGCGGCGAguCG- -5'
24608 5' -55.4 NC_005264.1 + 78961 0.66 0.910429
Target:  5'- ------aGGUGUgCGCGaaGUUCGGCa -3'
miRNA:   3'- aauaguaCCACAgGCGCggCGAGUCG- -5'
24608 5' -55.4 NC_005264.1 + 100090 0.66 0.904227
Target:  5'- ---gCAUGGcGgCCGCGggGCUCAGCg -3'
miRNA:   3'- aauaGUACCaCaGGCGCggCGAGUCG- -5'
24608 5' -55.4 NC_005264.1 + 133215 0.66 0.904227
Target:  5'- --cUCGUuc-GUCCGCGCCGUagAGCu -3'
miRNA:   3'- aauAGUAccaCAGGCGCGGCGagUCG- -5'
24608 5' -55.4 NC_005264.1 + 95444 0.66 0.904227
Target:  5'- -cGUCGUGGaauacgcuaCCGCGCCgGCgggcgCAGCg -3'
miRNA:   3'- aaUAGUACCaca------GGCGCGG-CGa----GUCG- -5'
24608 5' -55.4 NC_005264.1 + 124170 0.66 0.904227
Target:  5'- ---aCGUGGUGauggGCGCCGCcgCGGCc -3'
miRNA:   3'- aauaGUACCACagg-CGCGGCGa-GUCG- -5'
24608 5' -55.4 NC_005264.1 + 64167 0.66 0.897786
Target:  5'- ------cGGUGUgCaaGCGCCGC-CAGCa -3'
miRNA:   3'- aauaguaCCACAgG--CGCGGCGaGUCG- -5'
24608 5' -55.4 NC_005264.1 + 158192 0.66 0.897786
Target:  5'- -gAUCGUGcucGUGUCCGagaaGCgGCcCGGCg -3'
miRNA:   3'- aaUAGUAC---CACAGGCg---CGgCGaGUCG- -5'
24608 5' -55.4 NC_005264.1 + 39165 0.66 0.897786
Target:  5'- -gAUCGUGcucGUGUCCGagaaGCgGCcCGGCg -3'
miRNA:   3'- aaUAGUAC---CACAGGCg---CGgCGaGUCG- -5'
24608 5' -55.4 NC_005264.1 + 95961 0.67 0.891109
Target:  5'- ---aUAUGGUGUCgCG-GCUGCUCuccGCg -3'
miRNA:   3'- aauaGUACCACAG-GCgCGGCGAGu--CG- -5'
24608 5' -55.4 NC_005264.1 + 162675 0.67 0.891109
Target:  5'- -gGUCGUaGGUGUacggucggCGCGCUGCgcgcCGGCg -3'
miRNA:   3'- aaUAGUA-CCACAg-------GCGCGGCGa---GUCG- -5'
24608 5' -55.4 NC_005264.1 + 98657 0.67 0.891109
Target:  5'- -cGUCAgacgaacGGUGUCgGCGCUaGCUUAGa -3'
miRNA:   3'- aaUAGUa------CCACAGgCGCGG-CGAGUCg -5'
24608 5' -55.4 NC_005264.1 + 5198 0.67 0.891109
Target:  5'- cUGUC---GUGUCuCGCGCCGCggcgaGGCg -3'
miRNA:   3'- aAUAGuacCACAG-GCGCGGCGag---UCG- -5'
24608 5' -55.4 NC_005264.1 + 43649 0.67 0.891109
Target:  5'- -gGUCGUaGGUGUacggucggCGCGCUGCgcgcCGGCg -3'
miRNA:   3'- aaUAGUA-CCACAg-------GCGCGGCGa---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.