miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24610 3' -58.2 NC_005264.1 + 20368 0.66 0.854067
Target:  5'- gUGGGAGAGGugAauggaauuuccacgcACUGGCa-CAGUCu -3'
miRNA:   3'- aGCUCUCUCCugU---------------UGGCCGggGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 159295 0.66 0.850988
Target:  5'- aCGAGAGAugcuGGACGccGCCGcGUCgCGGUUc -3'
miRNA:   3'- aGCUCUCU----CCUGU--UGGC-CGGgGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 40268 0.66 0.850988
Target:  5'- aCGAGAGAugcuGGACGccGCCGcGUCgCGGUUc -3'
miRNA:   3'- aGCUCUCU----CCUGU--UGGC-CGGgGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 151907 0.66 0.843156
Target:  5'- gCG-GAGGGGACGG-CGGCUCCAu-- -3'
miRNA:   3'- aGCuCUCUCCUGUUgGCCGGGGUcag -5'
24610 3' -58.2 NC_005264.1 + 10881 0.66 0.83514
Target:  5'- gCGAGGGgccgugGGGAauucCCGGUgCCCGGUCa -3'
miRNA:   3'- aGCUCUC------UCCUguu-GGCCG-GGGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 129907 0.66 0.83514
Target:  5'- gCGAGGGgccgugGGGAauucCCGGUgCCCGGUCa -3'
miRNA:   3'- aGCUCUC------UCCUguu-GGCCG-GGGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 19302 0.66 0.83514
Target:  5'- -aGAG-GAGG-CAGCCGGacacaggcCCCCAGg- -3'
miRNA:   3'- agCUCuCUCCuGUUGGCC--------GGGGUCag -5'
24610 3' -58.2 NC_005264.1 + 111414 0.66 0.83514
Target:  5'- aCG-GAGGGGGCGACggCGGCucCCCGG-Cg -3'
miRNA:   3'- aGCuCUCUCCUGUUG--GCCG--GGGUCaG- -5'
24610 3' -58.2 NC_005264.1 + 118974 0.66 0.83514
Target:  5'- gCGAcGAcGAaGACGucuuuGCCGGCCCCAG-Cg -3'
miRNA:   3'- aGCU-CU-CUcCUGU-----UGGCCGGGGUCaG- -5'
24610 3' -58.2 NC_005264.1 + 3093 0.66 0.834328
Target:  5'- cCGAG-GAcccguucGGGCGAuucCCGGCCCCcuucguAGUCg -3'
miRNA:   3'- aGCUCuCU-------CCUGUU---GGCCGGGG------UCAG- -5'
24610 3' -58.2 NC_005264.1 + 122120 0.66 0.834328
Target:  5'- cCGAG-GAcccguucGGGCGAuucCCGGCCCCcuucguAGUCg -3'
miRNA:   3'- aGCUCuCU-------CCUGUU---GGCCGGGG------UCAG- -5'
24610 3' -58.2 NC_005264.1 + 21033 0.66 0.826947
Target:  5'- uUCGGcGAcGAGGACcauggaccuGGCCGGCCUUAG-Cg -3'
miRNA:   3'- -AGCU-CU-CUCCUG---------UUGGCCGGGGUCaG- -5'
24610 3' -58.2 NC_005264.1 + 79834 0.66 0.818583
Target:  5'- aUCGuGAGGGGA--ACaggGGCCUCAGUa -3'
miRNA:   3'- -AGCuCUCUCCUguUGg--CCGGGGUCAg -5'
24610 3' -58.2 NC_005264.1 + 95357 0.67 0.801375
Target:  5'- cUCGGcGGGGcGGCGGcCCGGCCUCGGg- -3'
miRNA:   3'- -AGCUcUCUC-CUGUU-GGCCGGGGUCag -5'
24610 3' -58.2 NC_005264.1 + 126649 0.67 0.792546
Target:  5'- cUCGGGGGGGGAUgAGCCGuagauugcgaucGUCCC-GUCg -3'
miRNA:   3'- -AGCUCUCUCCUG-UUGGC------------CGGGGuCAG- -5'
24610 3' -58.2 NC_005264.1 + 62002 0.67 0.792546
Target:  5'- gUCGAGGGAGaACucGCCGucGUCCCuGUCg -3'
miRNA:   3'- -AGCUCUCUCcUGu-UGGC--CGGGGuCAG- -5'
24610 3' -58.2 NC_005264.1 + 34905 0.67 0.783578
Target:  5'- uUCGAGGGcAGGGuuACUGGC-CCAGUg -3'
miRNA:   3'- -AGCUCUC-UCCUguUGGCCGgGGUCAg -5'
24610 3' -58.2 NC_005264.1 + 135161 0.67 0.783578
Target:  5'- gCGAGgcAGAGGcCAGCCGcguaCCUCGGUCc -3'
miRNA:   3'- aGCUC--UCUCCuGUUGGCc---GGGGUCAG- -5'
24610 3' -58.2 NC_005264.1 + 122007 0.67 0.77448
Target:  5'- aCGAGgaagaggaAGAGGAgGACCGGCCggcgcuaaucauCCAG-Cg -3'
miRNA:   3'- aGCUC--------UCUCCUgUUGGCCGG------------GGUCaG- -5'
24610 3' -58.2 NC_005264.1 + 31500 0.68 0.746485
Target:  5'- aCGAGGaAGGuCAGgCGGCUCCAGg- -3'
miRNA:   3'- aGCUCUcUCCuGUUgGCCGGGGUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.