miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24610 5' -61.8 NC_005264.1 + 101959 0.66 0.728279
Target:  5'- ----gUCCCGCCUgGCCGGUgucaucccgUGGCCCa -3'
miRNA:   3'- gccugAGGGCGGA-UGGCCA---------GUCGGGg -5'
24610 5' -61.8 NC_005264.1 + 153483 0.66 0.718913
Target:  5'- gGGACgaUCUGCuCUGCCGG-CAaaacggcggccGCCCCu -3'
miRNA:   3'- gCCUGa-GGGCG-GAUGGCCaGU-----------CGGGG- -5'
24610 5' -61.8 NC_005264.1 + 97956 0.66 0.718913
Target:  5'- aGGucauCUCcgCCGCCUugCGGgcaaucuccCAGCCgCCg -3'
miRNA:   3'- gCCu---GAG--GGCGGAugGCCa--------GUCGG-GG- -5'
24610 5' -61.8 NC_005264.1 + 67485 0.66 0.718913
Target:  5'- gCGG-CaCgCGCC-GCCcGUCGGCCCCa -3'
miRNA:   3'- -GCCuGaGgGCGGaUGGcCAGUCGGGG- -5'
24610 5' -61.8 NC_005264.1 + 114462 0.66 0.718913
Target:  5'- -cGACgcCCCaGUCUACCGG-CugcGCCCCa -3'
miRNA:   3'- gcCUGa-GGG-CGGAUGGCCaGu--CGGGG- -5'
24610 5' -61.8 NC_005264.1 + 137727 0.66 0.709479
Target:  5'- uCGGACUUcgCCGCgCUAa--GUCuGCCCCg -3'
miRNA:   3'- -GCCUGAG--GGCG-GAUggcCAGuCGGGG- -5'
24610 5' -61.8 NC_005264.1 + 24350 0.66 0.709479
Target:  5'- gGGGCauaucCCCGCCgcucuggcaugACCGGcuucgCGGCUCCc -3'
miRNA:   3'- gCCUGa----GGGCGGa----------UGGCCa----GUCGGGG- -5'
24610 5' -61.8 NC_005264.1 + 110974 0.66 0.709479
Target:  5'- cCGGAUUUCCaGCCUcGCCGaagaGUCGGUgacgCCCg -3'
miRNA:   3'- -GCCUGAGGG-CGGA-UGGC----CAGUCG----GGG- -5'
24610 5' -61.8 NC_005264.1 + 109944 0.66 0.709479
Target:  5'- uGGGgUCCCauGCC-ACCacgCAGCCCCc -3'
miRNA:   3'- gCCUgAGGG--CGGaUGGccaGUCGGGG- -5'
24610 5' -61.8 NC_005264.1 + 36699 0.66 0.699987
Target:  5'- gCGGAUUCUgccgcgcaagUGCC-AUCGGcUCAGCCgCCg -3'
miRNA:   3'- -GCCUGAGG----------GCGGaUGGCC-AGUCGG-GG- -5'
24610 5' -61.8 NC_005264.1 + 126675 0.66 0.690443
Target:  5'- -cGAaaCgCCGCCUGCCGGcucggagggcUCGGCCuCCa -3'
miRNA:   3'- gcCUgaG-GGCGGAUGGCC----------AGUCGG-GG- -5'
24610 5' -61.8 NC_005264.1 + 14990 0.66 0.690443
Target:  5'- gGGuAUUCCCGCaUACCGuGcCGGCgCCu -3'
miRNA:   3'- gCC-UGAGGGCGgAUGGC-CaGUCGgGG- -5'
24610 5' -61.8 NC_005264.1 + 60076 0.66 0.690443
Target:  5'- cCGaACUggCCCGCCccuagccuacUGCCGG-CGGCCCa -3'
miRNA:   3'- -GCcUGA--GGGCGG----------AUGGCCaGUCGGGg -5'
24610 5' -61.8 NC_005264.1 + 7648 0.66 0.690443
Target:  5'- -cGAaaCgCCGCCUGCCGGcucggagggcUCGGCCuCCa -3'
miRNA:   3'- gcCUgaG-GGCGGAUGGCC----------AGUCGG-GG- -5'
24610 5' -61.8 NC_005264.1 + 86806 0.66 0.680856
Target:  5'- gGGACaUUCCGCUgccGCUGuGUCGGCCg- -3'
miRNA:   3'- gCCUG-AGGGCGGa--UGGC-CAGUCGGgg -5'
24610 5' -61.8 NC_005264.1 + 86173 0.66 0.671233
Target:  5'- aGGuauCUUCUGCCgcACCGGuggccgcaUCGGCCUCg -3'
miRNA:   3'- gCCu--GAGGGCGGa-UGGCC--------AGUCGGGG- -5'
24610 5' -61.8 NC_005264.1 + 141578 0.66 0.671233
Target:  5'- aCGuuCUgCCGCCUA-UGGUCAGCUCg -3'
miRNA:   3'- -GCcuGAgGGCGGAUgGCCAGUCGGGg -5'
24610 5' -61.8 NC_005264.1 + 66604 0.67 0.661581
Target:  5'- uGGGCUgCgCCGCgUUGCCGGcgccgucgCGGCCCg -3'
miRNA:   3'- gCCUGA-G-GGCG-GAUGGCCa-------GUCGGGg -5'
24610 5' -61.8 NC_005264.1 + 39134 0.67 0.651909
Target:  5'- uCGGccuCUCCgGCCUGCUG-UgAGCCaCCg -3'
miRNA:   3'- -GCCu--GAGGgCGGAUGGCcAgUCGG-GG- -5'
24610 5' -61.8 NC_005264.1 + 128716 0.67 0.651909
Target:  5'- gCGGGCUCgCGCCUcgacGCUGuuUCGGCCgCu -3'
miRNA:   3'- -GCCUGAGgGCGGA----UGGCc-AGUCGGgG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.