Results 1 - 20 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 101959 | 0.66 | 0.728279 |
Target: 5'- ----gUCCCGCCUgGCCGGUgucaucccgUGGCCCa -3' miRNA: 3'- gccugAGGGCGGA-UGGCCA---------GUCGGGg -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 153483 | 0.66 | 0.718913 |
Target: 5'- gGGACgaUCUGCuCUGCCGG-CAaaacggcggccGCCCCu -3' miRNA: 3'- gCCUGa-GGGCG-GAUGGCCaGU-----------CGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 97956 | 0.66 | 0.718913 |
Target: 5'- aGGucauCUCcgCCGCCUugCGGgcaaucuccCAGCCgCCg -3' miRNA: 3'- gCCu---GAG--GGCGGAugGCCa--------GUCGG-GG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 67485 | 0.66 | 0.718913 |
Target: 5'- gCGG-CaCgCGCC-GCCcGUCGGCCCCa -3' miRNA: 3'- -GCCuGaGgGCGGaUGGcCAGUCGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 114462 | 0.66 | 0.718913 |
Target: 5'- -cGACgcCCCaGUCUACCGG-CugcGCCCCa -3' miRNA: 3'- gcCUGa-GGG-CGGAUGGCCaGu--CGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 137727 | 0.66 | 0.709479 |
Target: 5'- uCGGACUUcgCCGCgCUAa--GUCuGCCCCg -3' miRNA: 3'- -GCCUGAG--GGCG-GAUggcCAGuCGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 24350 | 0.66 | 0.709479 |
Target: 5'- gGGGCauaucCCCGCCgcucuggcaugACCGGcuucgCGGCUCCc -3' miRNA: 3'- gCCUGa----GGGCGGa----------UGGCCa----GUCGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 110974 | 0.66 | 0.709479 |
Target: 5'- cCGGAUUUCCaGCCUcGCCGaagaGUCGGUgacgCCCg -3' miRNA: 3'- -GCCUGAGGG-CGGA-UGGC----CAGUCG----GGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 109944 | 0.66 | 0.709479 |
Target: 5'- uGGGgUCCCauGCC-ACCacgCAGCCCCc -3' miRNA: 3'- gCCUgAGGG--CGGaUGGccaGUCGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 36699 | 0.66 | 0.699987 |
Target: 5'- gCGGAUUCUgccgcgcaagUGCC-AUCGGcUCAGCCgCCg -3' miRNA: 3'- -GCCUGAGG----------GCGGaUGGCC-AGUCGG-GG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 126675 | 0.66 | 0.690443 |
Target: 5'- -cGAaaCgCCGCCUGCCGGcucggagggcUCGGCCuCCa -3' miRNA: 3'- gcCUgaG-GGCGGAUGGCC----------AGUCGG-GG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 14990 | 0.66 | 0.690443 |
Target: 5'- gGGuAUUCCCGCaUACCGuGcCGGCgCCu -3' miRNA: 3'- gCC-UGAGGGCGgAUGGC-CaGUCGgGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 60076 | 0.66 | 0.690443 |
Target: 5'- cCGaACUggCCCGCCccuagccuacUGCCGG-CGGCCCa -3' miRNA: 3'- -GCcUGA--GGGCGG----------AUGGCCaGUCGGGg -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 7648 | 0.66 | 0.690443 |
Target: 5'- -cGAaaCgCCGCCUGCCGGcucggagggcUCGGCCuCCa -3' miRNA: 3'- gcCUgaG-GGCGGAUGGCC----------AGUCGG-GG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 86806 | 0.66 | 0.680856 |
Target: 5'- gGGACaUUCCGCUgccGCUGuGUCGGCCg- -3' miRNA: 3'- gCCUG-AGGGCGGa--UGGC-CAGUCGGgg -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 86173 | 0.66 | 0.671233 |
Target: 5'- aGGuauCUUCUGCCgcACCGGuggccgcaUCGGCCUCg -3' miRNA: 3'- gCCu--GAGGGCGGa-UGGCC--------AGUCGGGG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 141578 | 0.66 | 0.671233 |
Target: 5'- aCGuuCUgCCGCCUA-UGGUCAGCUCg -3' miRNA: 3'- -GCcuGAgGGCGGAUgGCCAGUCGGGg -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 66604 | 0.67 | 0.661581 |
Target: 5'- uGGGCUgCgCCGCgUUGCCGGcgccgucgCGGCCCg -3' miRNA: 3'- gCCUGA-G-GGCG-GAUGGCCa-------GUCGGGg -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 39134 | 0.67 | 0.651909 |
Target: 5'- uCGGccuCUCCgGCCUGCUG-UgAGCCaCCg -3' miRNA: 3'- -GCCu--GAGGgCGGAUGGCcAgUCGG-GG- -5' |
|||||||
24610 | 5' | -61.8 | NC_005264.1 | + | 128716 | 0.67 | 0.651909 |
Target: 5'- gCGGGCUCgCGCCUcgacGCUGuuUCGGCCgCu -3' miRNA: 3'- -GCCUGAGgGCGGA----UGGCc-AGUCGGgG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home