miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24611 3' -55.3 NC_005264.1 + 90015 0.66 0.950678
Target:  5'- uCGuu-UCCGGUUGUCGCGC-GCUUg- -3'
miRNA:   3'- -GCuauGGGCUAGCAGCGCGuCGAGac -5'
24611 3' -55.3 NC_005264.1 + 93113 0.66 0.950678
Target:  5'- uCGGUGCCCGcgC-UCcCGCGGUUCa- -3'
miRNA:   3'- -GCUAUGGGCuaGcAGcGCGUCGAGac -5'
24611 3' -55.3 NC_005264.1 + 134799 0.66 0.946458
Target:  5'- --uUACCCGG-CGUCGCGCGcGC-Cg- -3'
miRNA:   3'- gcuAUGGGCUaGCAGCGCGU-CGaGac -5'
24611 3' -55.3 NC_005264.1 + 46398 0.66 0.942007
Target:  5'- ----cCCCGAUCGUCGCccccGCGGC-Ca- -3'
miRNA:   3'- gcuauGGGCUAGCAGCG----CGUCGaGac -5'
24611 3' -55.3 NC_005264.1 + 146165 0.66 0.942007
Target:  5'- uCGAUGCCuCGcaugcaCGUCGCGUGGcCUCa- -3'
miRNA:   3'- -GCUAUGG-GCua----GCAGCGCGUC-GAGac -5'
24611 3' -55.3 NC_005264.1 + 156694 0.66 0.937322
Target:  5'- gCGAUGCgCGA-CGggCGCGCGGCcCUc -3'
miRNA:   3'- -GCUAUGgGCUaGCa-GCGCGUCGaGAc -5'
24611 3' -55.3 NC_005264.1 + 4980 0.66 0.937322
Target:  5'- aCGGUGCCCGccAUCGUCGuCGUu-CUCg- -3'
miRNA:   3'- -GCUAUGGGC--UAGCAGC-GCGucGAGac -5'
24611 3' -55.3 NC_005264.1 + 37668 0.66 0.937322
Target:  5'- gCGAUGCgCGA-CGggCGCGCGGCcCUc -3'
miRNA:   3'- -GCUAUGgGCUaGCa-GCGCGUCGaGAc -5'
24611 3' -55.3 NC_005264.1 + 155795 0.67 0.916226
Target:  5'- gGAUAggUCCGAauUCGUgGCGCAGCa--- -3'
miRNA:   3'- gCUAU--GGGCU--AGCAgCGCGUCGagac -5'
24611 3' -55.3 NC_005264.1 + 46949 0.67 0.916226
Target:  5'- gGGUuCCCGAcucCGUCuaGCGGCUCg- -3'
miRNA:   3'- gCUAuGGGCUa--GCAGcgCGUCGAGac -5'
24611 3' -55.3 NC_005264.1 + 158147 0.68 0.884599
Target:  5'- ---cACCCGAgaaCGUCGCagaGCAGCUUUc -3'
miRNA:   3'- gcuaUGGGCUa--GCAGCG---CGUCGAGAc -5'
24611 3' -55.3 NC_005264.1 + 24621 0.68 0.877596
Target:  5'- ---gGCCCGAUUGgucacCGCGCAGCgcaUGc -3'
miRNA:   3'- gcuaUGGGCUAGCa----GCGCGUCGag-AC- -5'
24611 3' -55.3 NC_005264.1 + 49424 0.68 0.877596
Target:  5'- uGGUGCCgcacaugGAgcucucugcCGUCGCGCAGCUCg- -3'
miRNA:   3'- gCUAUGGg------CUa--------GCAGCGCGUCGAGac -5'
24611 3' -55.3 NC_005264.1 + 21955 0.68 0.870377
Target:  5'- uCGAUGCCCGAgaGUgGuCGCGGCaUUGg -3'
miRNA:   3'- -GCUAUGGGCUagCAgC-GCGUCGaGAC- -5'
24611 3' -55.3 NC_005264.1 + 56225 0.68 0.862946
Target:  5'- aGAUcACUggCGAgCGUCGCGCGGCUUUu -3'
miRNA:   3'- gCUA-UGG--GCUaGCAGCGCGUCGAGAc -5'
24611 3' -55.3 NC_005264.1 + 16312 0.68 0.85531
Target:  5'- -uGUGCgCCGcacucUCGaCGCGUAGCUCUGg -3'
miRNA:   3'- gcUAUG-GGCu----AGCaGCGCGUCGAGAC- -5'
24611 3' -55.3 NC_005264.1 + 119734 0.69 0.839445
Target:  5'- ---cACCUGAUCGUCuccacggaaucgGCaagGCGGCUCUGg -3'
miRNA:   3'- gcuaUGGGCUAGCAG------------CG---CGUCGAGAC- -5'
24611 3' -55.3 NC_005264.1 + 48487 0.69 0.814269
Target:  5'- ----cCCCGcgCGUUGCGCGGCaaggCUGa -3'
miRNA:   3'- gcuauGGGCuaGCAGCGCGUCGa---GAC- -5'
24611 3' -55.3 NC_005264.1 + 60660 0.7 0.778454
Target:  5'- --cUGCUCGuuuccuUCGUCGCGCAGCUg-- -3'
miRNA:   3'- gcuAUGGGCu-----AGCAGCGCGUCGAgac -5'
24611 3' -55.3 NC_005264.1 + 106447 0.72 0.660883
Target:  5'- uCGAUAUgCGAUCGUCGCGC--CUCa- -3'
miRNA:   3'- -GCUAUGgGCUAGCAGCGCGucGAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.