miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24611 5' -60.4 NC_005264.1 + 894 0.66 0.709485
Target:  5'- uGGguGuacGGCC-CCgugUCgCGGGCCGCUGGg -3'
miRNA:   3'- -UCguC---UCGGcGGa--AG-GCCCGGUGAUU- -5'
24611 5' -60.4 NC_005264.1 + 119920 0.66 0.709485
Target:  5'- uGGguGuacGGCC-CCgugUCgCGGGCCGCUGGg -3'
miRNA:   3'- -UCguC---UCGGcGGa--AG-GCCCGGUGAUU- -5'
24611 5' -60.4 NC_005264.1 + 81330 0.66 0.699591
Target:  5'- cAGguGAGCCGCUUcccgCCaGGCUAuCUGGu -3'
miRNA:   3'- -UCguCUCGGCGGAa---GGcCCGGU-GAUU- -5'
24611 5' -60.4 NC_005264.1 + 146486 0.66 0.699591
Target:  5'- aAGCAGaAGCCuaugGUCUccCUGGGCCGCg-- -3'
miRNA:   3'- -UCGUC-UCGG----CGGAa-GGCCCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 123102 0.66 0.689641
Target:  5'- cAGCGGGGCUGUUgcaCGGGCgGCg-- -3'
miRNA:   3'- -UCGUCUCGGCGGaagGCCCGgUGauu -5'
24611 5' -60.4 NC_005264.1 + 4075 0.66 0.689641
Target:  5'- cAGCGGGGCUGUUgcaCGGGCgGCg-- -3'
miRNA:   3'- -UCGUCUCGGCGGaagGCCCGgUGauu -5'
24611 5' -60.4 NC_005264.1 + 107661 0.66 0.689641
Target:  5'- cGCGGucGCCGCCUUCagccgcgcccaGaGGCCGCa-- -3'
miRNA:   3'- uCGUCu-CGGCGGAAGg----------C-CCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 7990 0.66 0.669612
Target:  5'- uGCAcGGGCCGCCauugCgGGGCCGg--- -3'
miRNA:   3'- uCGU-CUCGGCGGaa--GgCCCGGUgauu -5'
24611 5' -60.4 NC_005264.1 + 142790 0.66 0.669612
Target:  5'- cGCGGGGCCGCgUggcgacaugCCaGGCCAUg-- -3'
miRNA:   3'- uCGUCUCGGCGgAa--------GGcCCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 127017 0.66 0.669612
Target:  5'- uGCAcGGGCCGCCauugCgGGGCCGg--- -3'
miRNA:   3'- uCGU-CUCGGCGGaa--GgCCCGGUgauu -5'
24611 5' -60.4 NC_005264.1 + 13095 0.66 0.669612
Target:  5'- uGUAG-GCuCGCCUcugcccgCCGGcGCCACUAc -3'
miRNA:   3'- uCGUCuCG-GCGGAa------GGCC-CGGUGAUu -5'
24611 5' -60.4 NC_005264.1 + 12310 0.66 0.663576
Target:  5'- gAGCcuGGAGCCGCCUgaccuuccucgugaCUGGGCgCACc-- -3'
miRNA:   3'- -UCG--UCUCGGCGGAa-------------GGCCCG-GUGauu -5'
24611 5' -60.4 NC_005264.1 + 131337 0.66 0.663576
Target:  5'- gAGCcuGGAGCCGCCUgaccuuccucgugaCUGGGCgCACc-- -3'
miRNA:   3'- -UCG--UCUCGGCGGAa-------------GGCCCG-GUGauu -5'
24611 5' -60.4 NC_005264.1 + 150716 0.66 0.659548
Target:  5'- cGGCGGGGCUGCCcgCCaaaGGUCGCg-- -3'
miRNA:   3'- -UCGUCUCGGCGGaaGGc--CCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 31690 0.66 0.659548
Target:  5'- cGGCGGGGCUGCCcgCCaaaGGUCGCg-- -3'
miRNA:   3'- -UCGUCUCGGCGGaaGGc--CCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 149139 0.66 0.659548
Target:  5'- cGCAcGAGCUGCCaguucuccCUGGGCCAUg-- -3'
miRNA:   3'- uCGU-CUCGGCGGaa------GGCCCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 80648 0.66 0.659548
Target:  5'- cGCGGccacgacacGGCCGCuCUUCaagaGGGCCAUg-- -3'
miRNA:   3'- uCGUC---------UCGGCG-GAAGg---CCCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 131859 0.67 0.639364
Target:  5'- -aCAGAGCCGUUcUCCGGGUC-CUu- -3'
miRNA:   3'- ucGUCUCGGCGGaAGGCCCGGuGAuu -5'
24611 5' -60.4 NC_005264.1 + 43480 0.67 0.639364
Target:  5'- cGCAGAGCuCGCUUgacaagaaccUCgGGGUCGCa-- -3'
miRNA:   3'- uCGUCUCG-GCGGA----------AGgCCCGGUGauu -5'
24611 5' -60.4 NC_005264.1 + 12833 0.67 0.639364
Target:  5'- -aCAGAGCCGUUcUCCGGGUC-CUu- -3'
miRNA:   3'- ucGUCUCGGCGGaAGGCCCGGuGAuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.