miRNA display CGI


Results 1 - 20 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 145604 0.66 0.921731
Target:  5'- aGCGAccGACGAUUacaagGCGCGCAG-GaggaaCCUg -3'
miRNA:   3'- -CGCU--UUGCUAGa----CGCGCGUCgCg----GGG- -5'
24613 3' -56.5 NC_005264.1 + 54320 0.66 0.921731
Target:  5'- uCGgcACGAUCcagcaguaaGCGCGCGGCGUUUa -3'
miRNA:   3'- cGCuuUGCUAGa--------CGCGCGUCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 62271 0.66 0.921731
Target:  5'- cCGAGACGAUC-GCG-GCA-CGCUUCa -3'
miRNA:   3'- cGCUUUGCUAGaCGCgCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 162823 0.66 0.921731
Target:  5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3'
miRNA:   3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 68407 0.66 0.921731
Target:  5'- uGCGGgagGACGggCUGCuCGCucuggacuaccGGCGCCgCg -3'
miRNA:   3'- -CGCU---UUGCuaGACGcGCG-----------UCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 43797 0.66 0.921731
Target:  5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3'
miRNA:   3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 58860 0.66 0.921183
Target:  5'- ---uGACGGUUUcuucggccguaggGUGCGCAGCGCCa- -3'
miRNA:   3'- cgcuUUGCUAGA-------------CGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 119367 0.66 0.918408
Target:  5'- uGUcAAGCGAgcUCUGCGCGCGaagaucaaacacaacGCGCUUa -3'
miRNA:   3'- -CGcUUUGCU--AGACGCGCGU---------------CGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 159016 0.66 0.916146
Target:  5'- -aGGAGCaGGUCUccGCGCGCAGggaGCaCCUc -3'
miRNA:   3'- cgCUUUG-CUAGA--CGCGCGUCg--CG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 86769 0.66 0.916146
Target:  5'- cCGucGACGcUCgcgGCGuCGCGGCGUCUCu -3'
miRNA:   3'- cGCu-UUGCuAGa--CGC-GCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 30517 0.66 0.916146
Target:  5'- cGgGAAGCGGcUCU-CGCGCAGUuugGCCgaCCg -3'
miRNA:   3'- -CgCUUUGCU-AGAcGCGCGUCG---CGG--GG- -5'
24613 3' -56.5 NC_005264.1 + 61241 0.66 0.916146
Target:  5'- gGCGAuGGCGcgCUccagcucacgGCGCGCcucGGCGUaCCCg -3'
miRNA:   3'- -CGCU-UUGCuaGA----------CGCGCG---UCGCG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 53044 0.66 0.916146
Target:  5'- -gGAAAUGGccccggccgagUCUGCGUcgGCAGCagaccguuuuaGCCCCc -3'
miRNA:   3'- cgCUUUGCU-----------AGACGCG--CGUCG-----------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 137152 0.66 0.916146
Target:  5'- gGCGggGCa---UGCGCGUccCGUCCCu -3'
miRNA:   3'- -CGCuuUGcuagACGCGCGucGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 126887 0.66 0.916146
Target:  5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3'
miRNA:   3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 46710 0.66 0.916146
Target:  5'- uCGAAGgGAUUgcgGCagagGCGCAGCGCUa- -3'
miRNA:   3'- cGCUUUgCUAGa--CG----CGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 42391 0.66 0.916146
Target:  5'- gGCGAcguGGCGGUggaaaUGCGCGaAGCucGUCCCa -3'
miRNA:   3'- -CGCU---UUGCUAg----ACGCGCgUCG--CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 7861 0.66 0.916146
Target:  5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3'
miRNA:   3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 45790 0.66 0.916146
Target:  5'- aGCGGcuauuGCGGUCUGgGcCGCcGCGCUg- -3'
miRNA:   3'- -CGCUu----UGCUAGACgC-GCGuCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 65513 0.66 0.916146
Target:  5'- aGUGAucGGCGAcCUGCuuggcacCGgGGCGCCCUc -3'
miRNA:   3'- -CGCU--UUGCUaGACGc------GCgUCGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.