miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 62271 0.66 0.921731
Target:  5'- cCGAGACGAUC-GCG-GCA-CGCUUCa -3'
miRNA:   3'- cGCUUUGCUAGaCGCgCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 39449 0.66 0.904284
Target:  5'- cCGggGCGGUggaaagcaugCUGCGaCGC-GCGCUCa -3'
miRNA:   3'- cGCuuUGCUA----------GACGC-GCGuCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 12100 0.66 0.904284
Target:  5'- cGCGAAcaaguACGccCcGCGCGCgaccuuuggcgGGCaGCCCCg -3'
miRNA:   3'- -CGCUU-----UGCuaGaCGCGCG-----------UCG-CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 109625 0.66 0.904284
Target:  5'- gGCGuGGGCGGgggGCGCGaCGGUugcaacucgcgGCCCCg -3'
miRNA:   3'- -CGC-UUUGCUagaCGCGC-GUCG-----------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 80508 0.66 0.904284
Target:  5'- aGCGAGAacAUCgccgcgGUGCGCAacgucGuCGCCCCc -3'
miRNA:   3'- -CGCUUUgcUAGa-----CGCGCGU-----C-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 13289 0.66 0.898011
Target:  5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3'
miRNA:   3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5'
24613 3' -56.5 NC_005264.1 + 31007 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 108668 0.66 0.891513
Target:  5'- cCGAGGCGAggUUG-GCGguGUGCgCCa -3'
miRNA:   3'- cGCUUUGCUa-GACgCGCguCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 106246 0.66 0.891513
Target:  5'- --cAGAUGggCcGCGCGUAGCGCCa- -3'
miRNA:   3'- cgcUUUGCuaGaCGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 40174 0.66 0.909736
Target:  5'- gGCGGccaucgcGACGAaugUCaGCGCGCc-CGCCCUc -3'
miRNA:   3'- -CGCU-------UUGCU---AGaCGCGCGucGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 63671 0.66 0.91033
Target:  5'- gGUGGGugGcUCUGUagauagaaacagGCGCGGCaagGUCCCg -3'
miRNA:   3'- -CGCUUugCuAGACG------------CGCGUCG---CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 7861 0.66 0.916146
Target:  5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3'
miRNA:   3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 43797 0.66 0.921731
Target:  5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3'
miRNA:   3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 58860 0.66 0.921183
Target:  5'- ---uGACGGUUUcuucggccguaggGUGCGCAGCGCCa- -3'
miRNA:   3'- cgcuUUGCUAGA-------------CGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 119367 0.66 0.918408
Target:  5'- uGUcAAGCGAgcUCUGCGCGCGaagaucaaacacaacGCGCUUa -3'
miRNA:   3'- -CGcUUUGCU--AGACGCGCGU---------------CGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 10519 0.66 0.916146
Target:  5'- cGCcGAGCGGgucCUGUGCgGCGcCGCCCUc -3'
miRNA:   3'- -CGcUUUGCUa--GACGCG-CGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 159016 0.66 0.916146
Target:  5'- -aGGAGCaGGUCUccGCGCGCAGggaGCaCCUc -3'
miRNA:   3'- cgCUUUG-CUAGA--CGCGCGUCg--CG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 65513 0.66 0.916146
Target:  5'- aGUGAucGGCGAcCUGCuuggcacCGgGGCGCCCUc -3'
miRNA:   3'- -CGCU--UUGCUaGACGc------GCgUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 45790 0.66 0.916146
Target:  5'- aGCGGcuauuGCGGUCUGgGcCGCcGCGCUg- -3'
miRNA:   3'- -CGCUu----UGCUAGACgC-GCGuCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 43904 0.66 0.916146
Target:  5'- -gGAGACGAUa---GCGCGGCcgucGCCUCg -3'
miRNA:   3'- cgCUUUGCUAgacgCGCGUCG----CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.