miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 159016 0.66 0.916146
Target:  5'- -aGGAGCaGGUCUccGCGCGCAGggaGCaCCUc -3'
miRNA:   3'- cgCUUUG-CUAGA--CGCGCGUCg--CG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 10519 0.66 0.916146
Target:  5'- cGCcGAGCGGgucCUGUGCgGCGcCGCCCUc -3'
miRNA:   3'- -CGcUUUGCUa--GACGCG-CGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 119367 0.66 0.918408
Target:  5'- uGUcAAGCGAgcUCUGCGCGCGaagaucaaacacaacGCGCUUa -3'
miRNA:   3'- -CGcUUUGCU--AGACGCGCGU---------------CGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 58860 0.66 0.921183
Target:  5'- ---uGACGGUUUcuucggccguaggGUGCGCAGCGCCa- -3'
miRNA:   3'- cgcuUUGCUAGA-------------CGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 43797 0.66 0.921731
Target:  5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3'
miRNA:   3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 109625 0.66 0.904284
Target:  5'- gGCGuGGGCGGgggGCGCGaCGGUugcaacucgcgGCCCCg -3'
miRNA:   3'- -CGC-UUUGCUagaCGCGC-GUCG-----------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 80508 0.66 0.904284
Target:  5'- aGCGAGAacAUCgccgcgGUGCGCAacgucGuCGCCCCc -3'
miRNA:   3'- -CGCUUUgcUAGa-----CGCGCGU-----C-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 97406 0.66 0.90854
Target:  5'- aGCGAuGCGAcguguguucggcagUgaGCGCuGCgGGCGCCgCCg -3'
miRNA:   3'- -CGCUuUGCU--------------AgaCGCG-CG-UCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 64433 0.66 0.914425
Target:  5'- gGCGAuGACG-UCUGC-CGCGGCucuaacucccuguaGCCuCCa -3'
miRNA:   3'- -CGCU-UUGCuAGACGcGCGUCG--------------CGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 59966 0.66 0.891513
Target:  5'- gGCGuccauGGCGAUUacgUGUcUGCAGCGCCgCa -3'
miRNA:   3'- -CGCu----UUGCUAG---ACGcGCGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 140056 0.66 0.891513
Target:  5'- -aGggGCGugagCaGUGuCGCcGCGCCCCu -3'
miRNA:   3'- cgCuuUGCua--GaCGC-GCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 26175 0.66 0.891513
Target:  5'- cGCGgcACuGUCgGCgGgGCcguuGGCGCCCCa -3'
miRNA:   3'- -CGCuuUGcUAGaCG-CgCG----UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 52882 0.66 0.891513
Target:  5'- cGCGcGAGCGAggggCUGCGUggugGCAuGgGaCCCCa -3'
miRNA:   3'- -CGC-UUUGCUa---GACGCG----CGU-CgC-GGGG- -5'
24613 3' -56.5 NC_005264.1 + 72498 0.66 0.891513
Target:  5'- gGCGGGuugaaGAUCUgcgccgagagGCGCGUGGCGCUUUg -3'
miRNA:   3'- -CGCUUug---CUAGA----------CGCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 100621 0.66 0.891513
Target:  5'- cCGAAGCGGc---CGCGgAGCGCgCCCu -3'
miRNA:   3'- cGCUUUGCUagacGCGCgUCGCG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 104807 0.66 0.891513
Target:  5'- cGCGAGACGAgcggGCGCcGCAcGaCGgCCUg -3'
miRNA:   3'- -CGCUUUGCUaga-CGCG-CGU-C-GCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 106246 0.66 0.891513
Target:  5'- --cAGAUGggCcGCGCGUAGCGCCa- -3'
miRNA:   3'- cgcUUUGCuaGaCGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 108668 0.66 0.891513
Target:  5'- cCGAGGCGAggUUG-GCGguGUGCgCCa -3'
miRNA:   3'- cGCUUUGCUa-GACgCGCguCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 31007 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 13289 0.66 0.898011
Target:  5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3'
miRNA:   3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.