miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 64778 1.13 0.001634
Target:  5'- cGCGAAACGAUCUGCGCGCAGCGCCCCc -3'
miRNA:   3'- -CGCUUUGCUAGACGCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 68444 0.83 0.147512
Target:  5'- cGCGccGCGGUCUGCGCGCGGaggGCCuCCa -3'
miRNA:   3'- -CGCuuUGCUAGACGCGCGUCg--CGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 20274 0.81 0.219267
Target:  5'- cGCGGAGgGGaccgUCUGCGCGCuuGCGgCCCCg -3'
miRNA:   3'- -CGCUUUgCU----AGACGCGCGu-CGC-GGGG- -5'
24613 3' -56.5 NC_005264.1 + 103081 0.8 0.230089
Target:  5'- cGCGAAGCG-UCcGCGuCGCAGCcgccGCCCCa -3'
miRNA:   3'- -CGCUUUGCuAGaCGC-GCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 40039 0.79 0.284442
Target:  5'- gGCG--GCGGUCgaccaaggGCcCGCAGCGCCCCg -3'
miRNA:   3'- -CGCuuUGCUAGa-------CGcGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 43644 0.79 0.284442
Target:  5'- gGCGAGgucguagguguACGGUCgGCGCGCuGCGCgCCg -3'
miRNA:   3'- -CGCUU-----------UGCUAGaCGCGCGuCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 159066 0.79 0.284442
Target:  5'- gGCG--GCGGUCgaccaaggGCcCGCAGCGCCCCg -3'
miRNA:   3'- -CGCuuUGCUAGa-------CGcGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 76349 0.77 0.347687
Target:  5'- cGCGcgGCGA-CUGCGCGCAGgCGCguugguaCCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCGCGUC-GCG-------GGG- -5'
24613 3' -56.5 NC_005264.1 + 162671 0.77 0.348452
Target:  5'- gGCGGGucguagguguACGGUCgGCGCGCuGCGCgCCg -3'
miRNA:   3'- -CGCUU----------UGCUAGaCGCGCGuCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 778 0.77 0.364003
Target:  5'- cGCGAcACGGUUcuUGCG-GUAGCGCUCCa -3'
miRNA:   3'- -CGCUuUGCUAG--ACGCgCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 33264 0.76 0.380028
Target:  5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3'
miRNA:   3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 152291 0.76 0.380028
Target:  5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3'
miRNA:   3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 153481 0.76 0.413463
Target:  5'- uCGGGACGAUCUGCucuGCcggcaaaacgGCGGcCGCCCCu -3'
miRNA:   3'- cGCUUUGCUAGACG---CG----------CGUC-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 95346 0.75 0.4221
Target:  5'- cGCGAAACGGacUCgGCgGgGCGGCGgCCCg -3'
miRNA:   3'- -CGCUUUGCU--AGaCG-CgCGUCGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 74621 0.75 0.438806
Target:  5'- -aGAAGCGAUCUugGCGCGCuaccgucAGCGCgaaCCCa -3'
miRNA:   3'- cgCUUUGCUAGA--CGCGCG-------UCGCG---GGG- -5'
24613 3' -56.5 NC_005264.1 + 8316 0.75 0.44865
Target:  5'- cCGgcACGcuuGUUUGCGCGCGgcauguGCGCCCCg -3'
miRNA:   3'- cGCuuUGC---UAGACGCGCGU------CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 20137 0.75 0.466853
Target:  5'- uGCGGgcaGGCGAUg-GCGCGCcgccGGCGCCCa -3'
miRNA:   3'- -CGCU---UUGCUAgaCGCGCG----UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 101359 0.75 0.466853
Target:  5'- cGCGggGCGcGUCgGCGCGCuagaacgaacGGCGCUCg -3'
miRNA:   3'- -CGCuuUGC-UAGaCGCGCG----------UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 30622 0.74 0.48543
Target:  5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3'
miRNA:   3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 149649 0.74 0.48543
Target:  5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3'
miRNA:   3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.