miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 30622 0.74 0.48543
Target:  5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3'
miRNA:   3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 45395 0.74 0.493905
Target:  5'- cGCGGcaAACGAUggagggcggcgccCUGCGCGCcGCgacaGCCCCg -3'
miRNA:   3'- -CGCU--UUGCUA-------------GACGCGCGuCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 86479 0.74 0.49485
Target:  5'- aGCGGguaccAACGcgcCUGCGCGCAGuCGCCgCg -3'
miRNA:   3'- -CGCU-----UUGCua-GACGCGCGUC-GCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 14386 0.74 0.503399
Target:  5'- aCGAAACGGUUcGuCGCGCAGCGUgguauaacuccguCCCa -3'
miRNA:   3'- cGCUUUGCUAGaC-GCGCGUCGCG-------------GGG- -5'
24613 3' -56.5 NC_005264.1 + 117005 0.74 0.508176
Target:  5'- -gGggGCGGUCUGCGCGgcgcaugacgaguaCAGCGCgaucagcgcggcggCCCa -3'
miRNA:   3'- cgCuuUGCUAGACGCGC--------------GUCGCG--------------GGG- -5'
24613 3' -56.5 NC_005264.1 + 1918 0.74 0.508176
Target:  5'- uGCGGGAUcccauccuccggcaaGAgUCUGUGCGCGGCcguuGCCCCc -3'
miRNA:   3'- -CGCUUUG---------------CU-AGACGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 120944 0.74 0.508176
Target:  5'- uGCGGGAUcccauccuccggcaaGAgUCUGUGCGCGGCcguuGCCCCc -3'
miRNA:   3'- -CGCUUUG---------------CU-AGACGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 150635 0.73 0.523587
Target:  5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3'
miRNA:   3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 88122 0.73 0.523587
Target:  5'- -gGAGACaGUUUcGCGCGCcGCGCCCUa -3'
miRNA:   3'- cgCUUUGcUAGA-CGCGCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 126628 0.73 0.523587
Target:  5'- cGCGGGcucUGGUCUGCGCGCAuGCGgUCUg -3'
miRNA:   3'- -CGCUUu--GCUAGACGCGCGU-CGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 31608 0.73 0.523587
Target:  5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3'
miRNA:   3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 7601 0.73 0.523587
Target:  5'- cGCGGGcucUGGUCUGCGCGCAuGCGgUCUg -3'
miRNA:   3'- -CGCUUu--GCUAGACGCGCGU-CGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 37667 0.73 0.533309
Target:  5'- cGCGAugcGCGAcggGCGCGCGGCccucGCCCUc -3'
miRNA:   3'- -CGCUu--UGCUagaCGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 156693 0.73 0.533309
Target:  5'- cGCGAugcGCGAcggGCGCGCGGCccucGCCCUc -3'
miRNA:   3'- -CGCUu--UGCUagaCGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 119165 0.73 0.542114
Target:  5'- gGCGGccgccuuAACGccg-GCGCGCAGCGCgCCg -3'
miRNA:   3'- -CGCU-------UUGCuagaCGCGCGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 138 0.73 0.542114
Target:  5'- gGCGGccgccuuAACGccg-GCGCGCAGCGCgCCg -3'
miRNA:   3'- -CGCU-------UUGCuagaCGCGCGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 131069 0.73 0.55294
Target:  5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3'
miRNA:   3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 10599 0.73 0.55294
Target:  5'- cGCGAccGCGAUCcauaucGCGCGaggcauuaAGUGCCCCa -3'
miRNA:   3'- -CGCUu-UGCUAGa-----CGCGCg-------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 12042 0.73 0.55294
Target:  5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3'
miRNA:   3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 7864 0.73 0.57677
Target:  5'- uGCGAGgcccccacguucgcuGCGcAUCUGCGCGCGuacGaCGUCCCc -3'
miRNA:   3'- -CGCUU---------------UGC-UAGACGCGCGU---C-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.