miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 98083 0.72 0.581766
Target:  5'- cGCGGccaaaucuaucagGGCGAUCcuUGCGCGgGGCacggcgccgaGCCCCa -3'
miRNA:   3'- -CGCU-------------UUGCUAG--ACGCGCgUCG----------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 142682 0.72 0.582766
Target:  5'- cGUGccGCGAUCUuggGCGCcgGCGGCGCgCCa -3'
miRNA:   3'- -CGCuuUGCUAGA---CGCG--CGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 82946 0.72 0.582766
Target:  5'- uGCGAcgucgccugcGACGGUC-GC-CGCcGCGCCCCc -3'
miRNA:   3'- -CGCU----------UUGCUAGaCGcGCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 75680 0.72 0.582766
Target:  5'- uGCGGA---GUC-GCGCGCAGCGCCg- -3'
miRNA:   3'- -CGCUUugcUAGaCGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 56397 0.72 0.592786
Target:  5'- gGCGcGACGAUCgcauaucgaGCGCGGCGCCg- -3'
miRNA:   3'- -CGCuUUGCUAGacg------CGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 104724 0.72 0.592786
Target:  5'- cGCGA---GGUC-GCGCaGCAGCGCCgCCu -3'
miRNA:   3'- -CGCUuugCUAGaCGCG-CGUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 7019 0.72 0.601827
Target:  5'- cGUGAAaguuauuGgGGUCUGCGUGCuGCGCCa- -3'
miRNA:   3'- -CGCUU-------UgCUAGACGCGCGuCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 64151 0.72 0.602833
Target:  5'- gGCGccGCGAUCcggccgGUGUGCaAGCGCCgCCa -3'
miRNA:   3'- -CGCuuUGCUAGa-----CGCGCG-UCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 61470 0.72 0.602833
Target:  5'- aGCGccguuCGuUCUaGCGCGCcgacGCGCCCCg -3'
miRNA:   3'- -CGCuuu--GCuAGA-CGCGCGu---CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 113865 0.72 0.609879
Target:  5'- uGCGAGGaagaGuUCUGCgccuacugcuuggaGCGCAGCGgCCCg -3'
miRNA:   3'- -CGCUUUg---CuAGACG--------------CGCGUCGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 50208 0.72 0.612902
Target:  5'- cGCGAAcGCG-UCUGCGUugcgugaccgGCGG-GCCCCg -3'
miRNA:   3'- -CGCUU-UGCuAGACGCG----------CGUCgCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 74299 0.72 0.612902
Target:  5'- aGCG--GCGGUCUgGCGCGCGGCaugGCCa- -3'
miRNA:   3'- -CGCuuUGCUAGA-CGCGCGUCG---CGGgg -5'
24613 3' -56.5 NC_005264.1 + 12007 0.72 0.622984
Target:  5'- cGCGucACGAcCUGCG-GCGGCGaCCgCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCgCGUCGC-GG-GG- -5'
24613 3' -56.5 NC_005264.1 + 13181 0.72 0.622984
Target:  5'- aCGAccuACGcgCUGCGCGCGGauccguCGCCgCCg -3'
miRNA:   3'- cGCUu--UGCuaGACGCGCGUC------GCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 132208 0.72 0.622984
Target:  5'- aCGAccuACGcgCUGCGCGCGGauccguCGCCgCCg -3'
miRNA:   3'- cGCUu--UGCuaGACGCGCGUC------GCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 131034 0.72 0.622984
Target:  5'- cGCGucACGAcCUGCG-GCGGCGaCCgCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCgCGUCGC-GG-GG- -5'
24613 3' -56.5 NC_005264.1 + 22755 0.72 0.622984
Target:  5'- gGCGAAGCGAUagcgGCgggcaaugagggGCGCGGCgacacugcucacGCCCCu -3'
miRNA:   3'- -CGCUUUGCUAga--CG------------CGCGUCG------------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 138521 0.72 0.632064
Target:  5'- cGCGAAgaaACGcucucUCUGCGCGUAGCcacagagGCCgCCg -3'
miRNA:   3'- -CGCUU---UGCu----AGACGCGCGUCG-------CGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 3409 0.72 0.633074
Target:  5'- aGCGGAACGAccauggaagGCG-GC-GCGCCCCa -3'
miRNA:   3'- -CGCUUUGCUaga------CGCgCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 66861 0.71 0.643162
Target:  5'- cGCGAAAUaGAUC-GCGCGCGGagagcaGCCgCg -3'
miRNA:   3'- -CGCUUUG-CUAGaCGCGCGUCg-----CGGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.