Results 21 - 40 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24613 | 3' | -56.5 | NC_005264.1 | + | 43904 | 0.66 | 0.916146 |
Target: 5'- -gGAGACGAUa---GCGCGGCcgucGCCUCg -3' miRNA: 3'- cgCUUUGCUAgacgCGCGUCG----CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 7861 | 0.66 | 0.916146 |
Target: 5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3' miRNA: 3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 86769 | 0.66 | 0.916146 |
Target: 5'- cCGucGACGcUCgcgGCGuCGCGGCGUCUCu -3' miRNA: 3'- cGCu-UUGCuAGa--CGC-GCGUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 126887 | 0.66 | 0.916146 |
Target: 5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3' miRNA: 3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 64433 | 0.66 | 0.914425 |
Target: 5'- gGCGAuGACG-UCUGC-CGCGGCucuaacucccuguaGCCuCCa -3' miRNA: 3'- -CGCU-UUGCuAGACGcGCGUCG--------------CGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 5005 | 0.66 | 0.912684 |
Target: 5'- aGCGAAgggaGCGGUUUGCGCagaggaggccacgagGUuccgcgucgugGGCGCCgCCu -3' miRNA: 3'- -CGCUU----UGCUAGACGCG---------------CG-----------UCGCGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 116557 | 0.66 | 0.91033 |
Target: 5'- -gGAGGCGGcgUCgaUGCGCaGCucGGCGaCCCCu -3' miRNA: 3'- cgCUUUGCU--AG--ACGCG-CG--UCGC-GGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 20702 | 0.66 | 0.91033 |
Target: 5'- uUGAGACucggacaguccAUCUGCGCGaGGUGCCUCc -3' miRNA: 3'- cGCUUUGc----------UAGACGCGCgUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 63671 | 0.66 | 0.91033 |
Target: 5'- gGUGGGugGcUCUGUagauagaaacagGCGCGGCaagGUCCCg -3' miRNA: 3'- -CGCUUugCuAGACG------------CGCGUCG---CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 40174 | 0.66 | 0.909736 |
Target: 5'- gGCGGccaucgcGACGAaugUCaGCGCGCc-CGCCCUc -3' miRNA: 3'- -CGCU-------UUGCU---AGaCGCGCGucGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 159201 | 0.66 | 0.909736 |
Target: 5'- gGCGGccaucgcGACGAaugUCaGCGCGCc-CGCCCUc -3' miRNA: 3'- -CGCU-------UUGCU---AGaCGCGCGucGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 97406 | 0.66 | 0.90854 |
Target: 5'- aGCGAuGCGAcguguguucggcagUgaGCGCuGCgGGCGCCgCCg -3' miRNA: 3'- -CGCUuUGCU--------------AgaCGCG-CG-UCGCGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 131127 | 0.66 | 0.904284 |
Target: 5'- cGCGAAcaaguACGccCcGCGCGCgaccuuuggcgGGCaGCCCCg -3' miRNA: 3'- -CGCUU-----UGCuaGaCGCGCG-----------UCG-CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 158476 | 0.66 | 0.904284 |
Target: 5'- cCGggGCGGUggaaagcaugCUGCGaCGC-GCGCUCa -3' miRNA: 3'- cGCuuUGCUA----------GACGC-GCGuCGCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 39449 | 0.66 | 0.904284 |
Target: 5'- cCGggGCGGUggaaagcaugCUGCGaCGC-GCGCUCa -3' miRNA: 3'- cGCuuUGCUA----------GACGC-GCGuCGCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 80508 | 0.66 | 0.904284 |
Target: 5'- aGCGAGAacAUCgccgcgGUGCGCAacgucGuCGCCCCc -3' miRNA: 3'- -CGCUUUgcUAGa-----CGCGCGU-----C-GCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 12100 | 0.66 | 0.904284 |
Target: 5'- cGCGAAcaaguACGccCcGCGCGCgaccuuuggcgGGCaGCCCCg -3' miRNA: 3'- -CGCUU-----UGCuaGaCGCGCG-----------UCG-CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 109625 | 0.66 | 0.904284 |
Target: 5'- gGCGuGGGCGGgggGCGCGaCGGUugcaacucgcgGCCCCg -3' miRNA: 3'- -CGC-UUUGCUagaCGCGC-GUCG-----------CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 91902 | 0.66 | 0.904284 |
Target: 5'- cGCGGcAGCGAUggGCggGCGCGGCGaCCa -3' miRNA: 3'- -CGCU-UUGCUAgaCG--CGCGUCGCgGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 132316 | 0.66 | 0.898011 |
Target: 5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3' miRNA: 3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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