miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 83739 0.66 0.898011
Target:  5'- gGCaGAGAUGcccUCUGCG-GCAGacaGCCCUc -3'
miRNA:   3'- -CG-CUUUGCu--AGACGCgCGUCg--CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 102290 0.66 0.898011
Target:  5'- aGCGAAACGggCacagGCGUGCcagAGCGCa-- -3'
miRNA:   3'- -CGCUUUGCuaGa---CGCGCG---UCGCGggg -5'
24613 3' -56.5 NC_005264.1 + 13289 0.66 0.898011
Target:  5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3'
miRNA:   3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5'
24613 3' -56.5 NC_005264.1 + 9385 0.66 0.898011
Target:  5'- cGCGAuuaugaGGUCcuCGUGCAGCGCCa- -3'
miRNA:   3'- -CGCUuug---CUAGacGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 36690 0.66 0.898011
Target:  5'- gGCGcaauGGCGGauUCUGcCGCGCAaGUGCCa- -3'
miRNA:   3'- -CGCu---UUGCU--AGAC-GCGCGU-CGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 67176 0.66 0.898011
Target:  5'- gGUGGAugGCGGcCUGCaGCGCuaugacgcGGCGCCUa -3'
miRNA:   3'- -CGCUU--UGCUaGACG-CGCG--------UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 100374 0.66 0.898011
Target:  5'- aUGggGCaaugCUGCGgaugcCGCugcuGCGCCCCg -3'
miRNA:   3'- cGCuuUGcua-GACGC-----GCGu---CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 27931 0.66 0.898011
Target:  5'- cGCGGuguuGGCGuUCUGCGCGuCGGUGgUCg -3'
miRNA:   3'- -CGCU----UUGCuAGACGCGC-GUCGCgGGg -5'
24613 3' -56.5 NC_005264.1 + 31007 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 150034 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 29878 0.66 0.894139
Target:  5'- aCGAAucaauuauacuugccGCGAag-GCGUGCGGCGCuacCCCg -3'
miRNA:   3'- cGCUU---------------UGCUagaCGCGCGUCGCG---GGG- -5'
24613 3' -56.5 NC_005264.1 + 148321 0.66 0.891513
Target:  5'- gGUGuucguAUGGUCUgagguugcGUGCGCGGuCGCCCUc -3'
miRNA:   3'- -CGCuu---UGCUAGA--------CGCGCGUC-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 59966 0.66 0.891513
Target:  5'- gGCGuccauGGCGAUUacgUGUcUGCAGCGCCgCa -3'
miRNA:   3'- -CGCu----UUGCUAG---ACGcGCGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 26175 0.66 0.891513
Target:  5'- cGCGgcACuGUCgGCgGgGCcguuGGCGCCCCa -3'
miRNA:   3'- -CGCuuUGcUAGaCG-CgCG----UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 72498 0.66 0.891513
Target:  5'- gGCGGGuugaaGAUCUgcgccgagagGCGCGUGGCGCUUUg -3'
miRNA:   3'- -CGCUUug---CUAGA----------CGCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 100621 0.66 0.891513
Target:  5'- cCGAAGCGGc---CGCGgAGCGCgCCCu -3'
miRNA:   3'- cGCUUUGCUagacGCGCgUCGCG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 108668 0.66 0.891513
Target:  5'- cCGAGGCGAggUUG-GCGguGUGCgCCa -3'
miRNA:   3'- cGCUUUGCUa-GACgCGCguCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 62476 0.66 0.891513
Target:  5'- gGUGuuGCGcGUCgUGCGCGCguccucuacGGCGUCCa -3'
miRNA:   3'- -CGCuuUGC-UAG-ACGCGCG---------UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 52882 0.66 0.891513
Target:  5'- cGCGcGAGCGAggggCUGCGUggugGCAuGgGaCCCCa -3'
miRNA:   3'- -CGC-UUUGCUa---GACGCG----CGU-CgC-GGGG- -5'
24613 3' -56.5 NC_005264.1 + 81767 0.66 0.891513
Target:  5'- aCGAGACG---UGCGCGCAGCauaCCg -3'
miRNA:   3'- cGCUUUGCuagACGCGCGUCGcggGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.