miRNA display CGI


Results 61 - 80 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 140056 0.66 0.891513
Target:  5'- -aGggGCGugagCaGUGuCGCcGCGCCCCu -3'
miRNA:   3'- cgCuuUGCua--GaCGC-GCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 59966 0.66 0.891513
Target:  5'- gGCGuccauGGCGAUUacgUGUcUGCAGCGCCgCa -3'
miRNA:   3'- -CGCu----UUGCUAG---ACGcGCGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 62476 0.66 0.891513
Target:  5'- gGUGuuGCGcGUCgUGCGCGCguccucuacGGCGUCCa -3'
miRNA:   3'- -CGCuuUGC-UAG-ACGCGCG---------UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 81767 0.66 0.891513
Target:  5'- aCGAGACG---UGCGCGCAGCauaCCg -3'
miRNA:   3'- cGCUUUGCuagACGCGCGUCGcggGG- -5'
24613 3' -56.5 NC_005264.1 + 126902 0.67 0.887507
Target:  5'- cGCGAAACaGGUCU-CGCGCuacauacuuaaacauAGCGagagccagcgaCCCCg -3'
miRNA:   3'- -CGCUUUG-CUAGAcGCGCG---------------UCGC-----------GGGG- -5'
24613 3' -56.5 NC_005264.1 + 71840 0.67 0.884793
Target:  5'- cGCGAauAACGAcgcgUCgcgGCG-GCGGUGUUCCg -3'
miRNA:   3'- -CGCU--UUGCU----AGa--CGCgCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 89304 0.67 0.884793
Target:  5'- gGCGAcACGugaUGCcCGCAcUGCCCCg -3'
miRNA:   3'- -CGCUuUGCuagACGcGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 36196 0.67 0.884793
Target:  5'- gGCGAAA-GAgcagaccgcaUGCGCGCAGaccagaGCCCg -3'
miRNA:   3'- -CGCUUUgCUag--------ACGCGCGUCg-----CGGGg -5'
24613 3' -56.5 NC_005264.1 + 87132 0.67 0.884793
Target:  5'- cGCGggGCGcaccaGUCUuCGCGCcgaaagacGGCGCUgCg -3'
miRNA:   3'- -CGCuuUGC-----UAGAcGCGCG--------UCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 6752 0.67 0.884793
Target:  5'- cGCGGGAaguguucauCGAUgUauuCGCGCAGCGCCg- -3'
miRNA:   3'- -CGCUUU---------GCUAgAc--GCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 110837 0.67 0.884793
Target:  5'- aGCGggGuCGcUCcGCGCGCGaCGUCCg -3'
miRNA:   3'- -CGCuuU-GCuAGaCGCGCGUcGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 155223 0.67 0.884793
Target:  5'- gGCGAAA-GAgcagaccgcaUGCGCGCAGaccagaGCCCg -3'
miRNA:   3'- -CGCUUUgCUag--------ACGCGCGUCg-----CGGGg -5'
24613 3' -56.5 NC_005264.1 + 42710 0.67 0.884793
Target:  5'- gGCGcucCGuccucCUGCuCGCuGCGCCCCa -3'
miRNA:   3'- -CGCuuuGCua---GACGcGCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 115939 0.67 0.882735
Target:  5'- cGCGAAcACGcg--GCGCaggcuaggagguacGCGGCGCCCg -3'
miRNA:   3'- -CGCUU-UGCuagaCGCG--------------CGUCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 36504 0.67 0.87996
Target:  5'- uGCGAAGCGcgCgGCcucgacgaggcggGCGCAggagccaucggccgcGCGCCCg -3'
miRNA:   3'- -CGCUUUGCuaGaCG-------------CGCGU---------------CGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 101310 0.67 0.877857
Target:  5'- uGCGGucauACGAacucuuUCUGgauauaCGCGCGGCGCUagCCg -3'
miRNA:   3'- -CGCUu---UGCU------AGAC------GCGCGUCGCGG--GG- -5'
24613 3' -56.5 NC_005264.1 + 93254 0.67 0.877857
Target:  5'- aGC-AAGCGggCUaggugGCGC-CAGgGCCCCg -3'
miRNA:   3'- -CGcUUUGCuaGA-----CGCGcGUCgCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 46851 0.67 0.877857
Target:  5'- gGCGAcgcacACGGcCUgGCGUuCAGCGUCCCu -3'
miRNA:   3'- -CGCUu----UGCUaGA-CGCGcGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 96641 0.67 0.877857
Target:  5'- uGCGGcaaguucaaAACcGUC-GCGCGCGGCGuuagcgcacCCCCg -3'
miRNA:   3'- -CGCU---------UUGcUAGaCGCGCGUCGC---------GGGG- -5'
24613 3' -56.5 NC_005264.1 + 44933 0.67 0.877857
Target:  5'- aGCGAAccGCGGgcccgUUGCGCGC-GUGaCUCCc -3'
miRNA:   3'- -CGCUU--UGCUa----GACGCGCGuCGC-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.