miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 138 0.73 0.542114
Target:  5'- gGCGGccgccuuAACGccg-GCGCGCAGCGCgCCg -3'
miRNA:   3'- -CGCU-------UUGCuagaCGCGCGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 778 0.77 0.364003
Target:  5'- cGCGAcACGGUUcuUGCG-GUAGCGCUCCa -3'
miRNA:   3'- -CGCUuUGCUAG--ACGCgCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 1918 0.74 0.508176
Target:  5'- uGCGGGAUcccauccuccggcaaGAgUCUGUGCGCGGCcguuGCCCCc -3'
miRNA:   3'- -CGCUUUG---------------CU-AGACGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 2870 0.7 0.742228
Target:  5'- uGCGGcuGCGAUCgaccgGgGCGCGGCGCg-- -3'
miRNA:   3'- -CGCUu-UGCUAGa----CgCGCGUCGCGggg -5'
24613 3' -56.5 NC_005264.1 + 3409 0.72 0.633074
Target:  5'- aGCGGAACGAccauggaagGCG-GC-GCGCCCCa -3'
miRNA:   3'- -CGCUUUGCUaga------CGCgCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 3811 0.68 0.823646
Target:  5'- uGCGAGGaGGUgcuccCUGCGCGCGGagaccuGCUCCu -3'
miRNA:   3'- -CGCUUUgCUA-----GACGCGCGUCg-----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 4394 0.7 0.742228
Target:  5'- cCGAugucucCGGcgCUGagcaGCGCAGUGCCCCc -3'
miRNA:   3'- cGCUuu----GCUa-GACg---CGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 4481 0.66 0.916146
Target:  5'- aGCgGAAACcGUCaagggGCGCGguGCGgCCg -3'
miRNA:   3'- -CG-CUUUGcUAGa----CGCGCguCGCgGGg -5'
24613 3' -56.5 NC_005264.1 + 5005 0.66 0.912684
Target:  5'- aGCGAAgggaGCGGUUUGCGCagaggaggccacgagGUuccgcgucgugGGCGCCgCCu -3'
miRNA:   3'- -CGCUU----UGCUAGACGCG---------------CG-----------UCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 6231 0.69 0.770522
Target:  5'- -gGAGACGGguUCUGCG-GCGGC-CCCg -3'
miRNA:   3'- cgCUUUGCU--AGACGCgCGUCGcGGGg -5'
24613 3' -56.5 NC_005264.1 + 6517 0.68 0.823646
Target:  5'- aGCGAAGCag-C-GCGUuuGCAGCGCCgCg -3'
miRNA:   3'- -CGCUUUGcuaGaCGCG--CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 6583 0.69 0.7888
Target:  5'- gGCGAuGACGGUUUGCaUGgAG-GCCCCa -3'
miRNA:   3'- -CGCU-UUGCUAGACGcGCgUCgCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 6752 0.67 0.884793
Target:  5'- cGCGGGAaguguucauCGAUgUauuCGCGCAGCGCCg- -3'
miRNA:   3'- -CGCUUU---------GCUAgAc--GCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 6892 0.67 0.855789
Target:  5'- cGCGAGccGCGcaGUCccaGCGCGCGGCuuUCCg -3'
miRNA:   3'- -CGCUU--UGC--UAGa--CGCGCGUCGcgGGG- -5'
24613 3' -56.5 NC_005264.1 + 6985 0.69 0.751764
Target:  5'- aGUGgcGCGGgguuguccCUGCGgGCGGCGCCa- -3'
miRNA:   3'- -CGCuuUGCUa-------GACGCgCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 7019 0.72 0.601827
Target:  5'- cGUGAAaguuauuGgGGUCUGCGUGCuGCGCCa- -3'
miRNA:   3'- -CGCUU-------UgCUAGACGCGCGuCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 7601 0.73 0.523587
Target:  5'- cGCGGGcucUGGUCUGCGCGCAuGCGgUCUg -3'
miRNA:   3'- -CGCUUu--GCUAGACGCGCGU-CGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 7861 0.66 0.916146
Target:  5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3'
miRNA:   3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 7864 0.73 0.57677
Target:  5'- uGCGAGgcccccacguucgcuGCGcAUCUGCGCGCGuacGaCGUCCCc -3'
miRNA:   3'- -CGCUU---------------UGC-UAGACGCGCGU---C-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 8246 0.67 0.877857
Target:  5'- cGCGGuua-GUCUG-GCcaGCGGCGCCCUg -3'
miRNA:   3'- -CGCUuugcUAGACgCG--CGUCGCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.