miRNA display CGI


Results 21 - 40 of 255 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 8298 0.71 0.683352
Target:  5'- cGUGGgcGACGGgggcacCUGCGcCGCGGCGUCgCCg -3'
miRNA:   3'- -CGCU--UUGCUa-----GACGC-GCGUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 8316 0.75 0.44865
Target:  5'- cCGgcACGcuuGUUUGCGCGCGgcauguGCGCCCCg -3'
miRNA:   3'- cGCuuUGC---UAGACGCGCGU------CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 9385 0.66 0.898011
Target:  5'- cGCGAuuaugaGGUCcuCGUGCAGCGCCa- -3'
miRNA:   3'- -CGCUuug---CUAGacGCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 9489 0.71 0.653242
Target:  5'- cGCGucAGCGAgUCaGCcagcgucagGCGCGGCGCCCUc -3'
miRNA:   3'- -CGCu-UUGCU-AGaCG---------CGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 9608 0.67 0.848032
Target:  5'- gGCGAcGCGAaCUGCGCugaGCAG-GCCa- -3'
miRNA:   3'- -CGCUuUGCUaGACGCG---CGUCgCGGgg -5'
24613 3' -56.5 NC_005264.1 + 10519 0.66 0.916146
Target:  5'- cGCcGAGCGGgucCUGUGCgGCGcCGCCCUc -3'
miRNA:   3'- -CGcUUUGCUa--GACGCG-CGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 10599 0.73 0.55294
Target:  5'- cGCGAccGCGAUCcauaucGCGCGaggcauuaAGUGCCCCa -3'
miRNA:   3'- -CGCUu-UGCUAGa-----CGCGCg-------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 10975 0.68 0.840084
Target:  5'- cGCGAGACGccccccacguGUCgccGCcggaGCGGCGgCCCCa -3'
miRNA:   3'- -CGCUUUGC----------UAGa--CGcg--CGUCGC-GGGG- -5'
24613 3' -56.5 NC_005264.1 + 11634 0.67 0.848032
Target:  5'- cGUGGAACGGuaUCaGCGCGgCAGgGCUgCu -3'
miRNA:   3'- -CGCUUUGCU--AGaCGCGC-GUCgCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 12007 0.72 0.622984
Target:  5'- cGCGucACGAcCUGCG-GCGGCGaCCgCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCgCGUCGC-GG-GG- -5'
24613 3' -56.5 NC_005264.1 + 12042 0.73 0.55294
Target:  5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3'
miRNA:   3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 12100 0.66 0.904284
Target:  5'- cGCGAAcaaguACGccCcGCGCGCgaccuuuggcgGGCaGCCCCg -3'
miRNA:   3'- -CGCUU-----UGCuaGaCGCGCG-----------UCG-CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 13181 0.72 0.622984
Target:  5'- aCGAccuACGcgCUGCGCGCGGauccguCGCCgCCg -3'
miRNA:   3'- cGCUu--UGCuaGACGCGCGUC------GCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 13289 0.66 0.898011
Target:  5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3'
miRNA:   3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5'
24613 3' -56.5 NC_005264.1 + 14386 0.74 0.503399
Target:  5'- aCGAAACGGUUcGuCGCGCAGCGUgguauaacuccguCCCa -3'
miRNA:   3'- cGCUUUGCUAGaC-GCGCGUCGCG-------------GGG- -5'
24613 3' -56.5 NC_005264.1 + 15474 0.71 0.683352
Target:  5'- cGCGAAagcgGCGAUCgcgGCGgGCAuGgGCCUg -3'
miRNA:   3'- -CGCUU----UGCUAGa--CGCgCGU-CgCGGGg -5'
24613 3' -56.5 NC_005264.1 + 17372 0.69 0.770522
Target:  5'- gGCGgcGCGGUCUGUGUaCGuGCGCCg- -3'
miRNA:   3'- -CGCuuUGCUAGACGCGcGU-CGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 17882 0.69 0.770522
Target:  5'- gGCGGGcUGAUCUacgGCGCGCAcaGCagcugaucaGCCCCc -3'
miRNA:   3'- -CGCUUuGCUAGA---CGCGCGU--CG---------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 20137 0.75 0.466853
Target:  5'- uGCGGgcaGGCGAUg-GCGCGCcgccGGCGCCCa -3'
miRNA:   3'- -CGCU---UUGCUAgaCGCGCG----UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 20274 0.81 0.219267
Target:  5'- cGCGGAGgGGaccgUCUGCGCGCuuGCGgCCCCg -3'
miRNA:   3'- -CGCUUUgCU----AGACGCGCGu-CGC-GGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.