miRNA display CGI


Results 41 - 60 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 20702 0.66 0.91033
Target:  5'- uUGAGACucggacaguccAUCUGCGCGaGGUGCCUCc -3'
miRNA:   3'- cGCUUUGc----------UAGACGCGCgUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 22000 0.68 0.815168
Target:  5'- aGCGAAAgGcgCgGCGCGUAGguuuuuUGCCCg -3'
miRNA:   3'- -CGCUUUgCuaGaCGCGCGUC------GCGGGg -5'
24613 3' -56.5 NC_005264.1 + 22755 0.72 0.622984
Target:  5'- gGCGAAGCGAUagcgGCgggcaaugagggGCGCGGCgacacugcucacGCCCCu -3'
miRNA:   3'- -CGCUUUGCUAga--CG------------CGCGUCG------------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 25306 0.7 0.722883
Target:  5'- cGCGAAGCGGUCUuccucgaaGuCGuCGUAGUugccgGCCCCc -3'
miRNA:   3'- -CGCUUUGCUAGA--------C-GC-GCGUCG-----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 25871 0.68 0.823646
Target:  5'- cGCGAGACGcucgaaccCUGCGUagauuGCGaUGCCCCa -3'
miRNA:   3'- -CGCUUUGCua------GACGCG-----CGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 26175 0.66 0.891513
Target:  5'- cGCGgcACuGUCgGCgGgGCcguuGGCGCCCCa -3'
miRNA:   3'- -CGCuuUGcUAGaCG-CgCG----UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 26377 0.69 0.761199
Target:  5'- uGCGcgGCGccGUCUcugaGCGCGgccuCAGCGCCCa -3'
miRNA:   3'- -CGCuuUGC--UAGA----CGCGC----GUCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 27931 0.66 0.898011
Target:  5'- cGCGGuguuGGCGuUCUGCGCGuCGGUGgUCg -3'
miRNA:   3'- -CGCU----UUGCuAGACGCGC-GUCGCgGGg -5'
24613 3' -56.5 NC_005264.1 + 29878 0.66 0.894139
Target:  5'- aCGAAucaauuauacuugccGCGAag-GCGUGCGGCGCuacCCCg -3'
miRNA:   3'- cGCUU---------------UGCUagaCGCGCGUCGCG---GGG- -5'
24613 3' -56.5 NC_005264.1 + 30103 0.71 0.683352
Target:  5'- cGCGAGuCGAgaUGCGgGCGGCGCggcaCCg -3'
miRNA:   3'- -CGCUUuGCUagACGCgCGUCGCGg---GG- -5'
24613 3' -56.5 NC_005264.1 + 30517 0.66 0.916146
Target:  5'- cGgGAAGCGGcUCU-CGCGCAGUuugGCCgaCCg -3'
miRNA:   3'- -CgCUUUGCU-AGAcGCGCGUCG---CGG--GG- -5'
24613 3' -56.5 NC_005264.1 + 30622 0.74 0.48543
Target:  5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3'
miRNA:   3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 31007 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 31209 0.67 0.855789
Target:  5'- cCGAGGCGugaccAUCUGUucuucuccGCGC-GCGCCCa -3'
miRNA:   3'- cGCUUUGC-----UAGACG--------CGCGuCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 31608 0.73 0.523587
Target:  5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3'
miRNA:   3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 31660 0.7 0.713092
Target:  5'- uGUGAcGCGAaCUGCGCgagGCAGgGCUCUc -3'
miRNA:   3'- -CGCUuUGCUaGACGCG---CGUCgCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 32281 0.71 0.673346
Target:  5'- aGCGAGAC---CUGCGCGUAGCacacGCgCCg -3'
miRNA:   3'- -CGCUUUGcuaGACGCGCGUCG----CGgGG- -5'
24613 3' -56.5 NC_005264.1 + 33049 0.69 0.751764
Target:  5'- cGCGAcucagcuaaGAUaAUCUGCGacguCGCGGUGCCCg -3'
miRNA:   3'- -CGCU---------UUGcUAGACGC----GCGUCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 33264 0.76 0.380028
Target:  5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3'
miRNA:   3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 33707 0.68 0.815168
Target:  5'- cCGAGccGCG-UCUGCGCGUAGaaaCCCUg -3'
miRNA:   3'- cGCUU--UGCuAGACGCGCGUCgc-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.