miRNA display CGI


Results 1 - 20 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 162823 0.66 0.921731
Target:  5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3'
miRNA:   3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 162671 0.77 0.348452
Target:  5'- gGCGGGucguagguguACGGUCgGCGCGCuGCGCgCCg -3'
miRNA:   3'- -CGCUU----------UGCUAGaCGCGCGuCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 161305 0.71 0.683352
Target:  5'- cCGgcGCGGUCaacGC-CGCGGgGCCCCa -3'
miRNA:   3'- cGCuuUGCUAGa--CGcGCGUCgCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 159201 0.66 0.909736
Target:  5'- gGCGGccaucgcGACGAaugUCaGCGCGCc-CGCCCUc -3'
miRNA:   3'- -CGCU-------UUGCU---AGaCGCGCGucGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 159066 0.79 0.284442
Target:  5'- gGCG--GCGGUCgaccaaggGCcCGCAGCGCCCCg -3'
miRNA:   3'- -CGCuuUGCUAGa-------CGcGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 159016 0.66 0.916146
Target:  5'- -aGGAGCaGGUCUccGCGCGCAGggaGCaCCUc -3'
miRNA:   3'- cgCUUUG-CUAGA--CGCGCGUCg--CG-GGG- -5'
24613 3' -56.5 NC_005264.1 + 158601 0.71 0.673346
Target:  5'- cCGGGACuGAUCUaccuuCGCGUGGCGCCgCCu -3'
miRNA:   3'- cGCUUUG-CUAGAc----GCGCGUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 158476 0.66 0.904284
Target:  5'- cCGggGCGGUggaaagcaugCUGCGaCGC-GCGCUCa -3'
miRNA:   3'- cGCuuUGCUA----------GACGC-GCGuCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 158430 0.69 0.761199
Target:  5'- gGCGAAGgGGgcaCUGCGCugcuCAGCGCCg- -3'
miRNA:   3'- -CGCUUUgCUa--GACGCGc---GUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 158339 0.68 0.831953
Target:  5'- cGCGGAACacaagCgGC-CGCAccGCGCCCCu -3'
miRNA:   3'- -CGCUUUGcua--GaCGcGCGU--CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 156693 0.73 0.533309
Target:  5'- cGCGAugcGCGAcggGCGCGCGGCccucGCCCUc -3'
miRNA:   3'- -CGCUu--UGCUagaCGCGCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 155223 0.67 0.884793
Target:  5'- gGCGAAA-GAgcagaccgcaUGCGCGCAGaccagaGCCCg -3'
miRNA:   3'- -CGCUUUgCUag--------ACGCGCGUCg-----CGGGg -5'
24613 3' -56.5 NC_005264.1 + 154526 0.67 0.863349
Target:  5'- aCGAcGGCGAcgCcGCgGCGCAgGUGCCCCc -3'
miRNA:   3'- cGCU-UUGCUa-GaCG-CGCGU-CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 154511 0.68 0.840084
Target:  5'- uGCGggGCGcacaugCcGCGCGCaaacaAGCGUgCCg -3'
miRNA:   3'- -CGCuuUGCua----GaCGCGCG-----UCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 153481 0.76 0.413463
Target:  5'- uCGGGACGAUCUGCucuGCcggcaaaacgGCGGcCGCCCCu -3'
miRNA:   3'- cGCUUUGCUAGACG---CG----------CGUC-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 152291 0.76 0.380028
Target:  5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3'
miRNA:   3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 150635 0.73 0.523587
Target:  5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3'
miRNA:   3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 150034 0.66 0.897371
Target:  5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3'
miRNA:   3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 149649 0.74 0.48543
Target:  5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3'
miRNA:   3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5'
24613 3' -56.5 NC_005264.1 + 148321 0.66 0.891513
Target:  5'- gGUGuucguAUGGUCUgagguugcGUGCGCGGuCGCCCUc -3'
miRNA:   3'- -CGCuu---UGCUAGA--------CGCGCGUC-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.