miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 146319 0.69 0.776978
Target:  5'- uUGAGGCGugcuuguaccauccGUCUGCGC-CGGCGUgCCu -3'
miRNA:   3'- cGCUUUGC--------------UAGACGCGcGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 145604 0.66 0.921731
Target:  5'- aGCGAccGACGAUUacaagGCGCGCAG-GaggaaCCUg -3'
miRNA:   3'- -CGCU--UUGCUAGa----CGCGCGUCgCg----GGG- -5'
24613 3' -56.5 NC_005264.1 + 144417 0.69 0.751764
Target:  5'- cGCGccGAGCGAgaggGCGCGCcuGCGCCggCCg -3'
miRNA:   3'- -CGC--UUUGCUaga-CGCGCGu-CGCGG--GG- -5'
24613 3' -56.5 NC_005264.1 + 144295 0.68 0.803908
Target:  5'- cCGAcuGACGccg-GCGCGCccucagggggagacGGCGCCCCc -3'
miRNA:   3'- cGCU--UUGCuagaCGCGCG--------------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 142682 0.72 0.582766
Target:  5'- cGUGccGCGAUCUuggGCGCcgGCGGCGCgCCa -3'
miRNA:   3'- -CGCuuUGCUAGA---CGCG--CGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 141960 0.68 0.831953
Target:  5'- aCGAGACGAccaagaccagagUCUuucuccuuuuaGuCGCGCAGCGCCg- -3'
miRNA:   3'- cGCUUUGCU------------AGA-----------C-GCGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 141312 0.68 0.831953
Target:  5'- aCGAAGCGucaacuacacCUGCGCccacugcgacgGCGGUGCCCa -3'
miRNA:   3'- cGCUUUGCua--------GACGCG-----------CGUCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 140056 0.66 0.891513
Target:  5'- -aGggGCGugagCaGUGuCGCcGCGCCCCu -3'
miRNA:   3'- cgCuuUGCua--GaCGC-GCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 139298 0.68 0.80653
Target:  5'- ----cGCGGUa-GCGCGUAGCGUUCCg -3'
miRNA:   3'- cgcuuUGCUAgaCGCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 138521 0.72 0.632064
Target:  5'- cGCGAAgaaACGcucucUCUGCGCGUAGCcacagagGCCgCCg -3'
miRNA:   3'- -CGCUU---UGCu----AGACGCGCGUCG-------CGG-GG- -5'
24613 3' -56.5 NC_005264.1 + 138476 0.69 0.770522
Target:  5'- cGCGAAGcCGGUCaUGCcagaGCGGCggggauauGCCCCg -3'
miRNA:   3'- -CGCUUU-GCUAG-ACGcg--CGUCG--------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 138327 0.67 0.870707
Target:  5'- uGUGGucAugGcgCgUGCGCGacaaGGCGCCCg -3'
miRNA:   3'- -CGCU--UugCuaG-ACGCGCg---UCGCGGGg -5'
24613 3' -56.5 NC_005264.1 + 137872 0.7 0.722883
Target:  5'- -aGAGuuucCGAUUcG-GCGCAGCGCCCUg -3'
miRNA:   3'- cgCUUu---GCUAGaCgCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 137152 0.66 0.916146
Target:  5'- gGCGggGCa---UGCGCGUccCGUCCCu -3'
miRNA:   3'- -CGCuuUGcuagACGCGCGucGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 136940 0.7 0.703234
Target:  5'- gGCGGAcaaGAa--G-GCGCAGCGCCCCa -3'
miRNA:   3'- -CGCUUug-CUagaCgCGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 136110 0.7 0.722883
Target:  5'- aGCGAcgacgacgaauAACGAcgCgggGaGCGCAuGCGCCCCg -3'
miRNA:   3'- -CGCU-----------UUGCUa-Ga--CgCGCGU-CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 133381 0.69 0.797738
Target:  5'- gGCGAGAgucAUCgcgGCgGCGCAGCccguuggugGCCCCa -3'
miRNA:   3'- -CGCUUUgc-UAGa--CG-CGCGUCG---------CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 132757 0.68 0.815168
Target:  5'- cGCGAuuCuGUCcggGCGCgGCGGCGCCg- -3'
miRNA:   3'- -CGCUuuGcUAGa--CGCG-CGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 132316 0.66 0.898011
Target:  5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3'
miRNA:   3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5'
24613 3' -56.5 NC_005264.1 + 132208 0.72 0.622984
Target:  5'- aCGAccuACGcgCUGCGCGCGGauccguCGCCgCCg -3'
miRNA:   3'- cGCUu--UGCuaGACGCGCGUC------GCGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.