Results 1 - 20 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24613 | 3' | -56.5 | NC_005264.1 | + | 64778 | 1.13 | 0.001634 |
Target: 5'- cGCGAAACGAUCUGCGCGCAGCGCCCCc -3' miRNA: 3'- -CGCUUUGCUAGACGCGCGUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 131069 | 0.73 | 0.55294 |
Target: 5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3' miRNA: 3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 7864 | 0.73 | 0.57677 |
Target: 5'- uGCGAGgcccccacguucgcuGCGcAUCUGCGCGCGuacGaCGUCCCc -3' miRNA: 3'- -CGCUU---------------UGC-UAGACGCGCGU---C-GCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 62271 | 0.66 | 0.921731 |
Target: 5'- cCGAGACGAUC-GCG-GCA-CGCUUCa -3' miRNA: 3'- cGCUUUGCUAGaCGCgCGUcGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 76349 | 0.77 | 0.347687 |
Target: 5'- cGCGcgGCGA-CUGCGCGCAGgCGCguugguaCCCg -3' miRNA: 3'- -CGCuuUGCUaGACGCGCGUC-GCG-------GGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 162671 | 0.77 | 0.348452 |
Target: 5'- gGCGGGucguagguguACGGUCgGCGCGCuGCGCgCCg -3' miRNA: 3'- -CGCUU----------UGCUAGaCGCGCGuCGCGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 152291 | 0.76 | 0.380028 |
Target: 5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3' miRNA: 3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 8316 | 0.75 | 0.44865 |
Target: 5'- cCGgcACGcuuGUUUGCGCGCGgcauguGCGCCCCg -3' miRNA: 3'- cGCuuUGC---UAGACGCGCGU------CGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 117005 | 0.74 | 0.508176 |
Target: 5'- -gGggGCGGUCUGCGCGgcgcaugacgaguaCAGCGCgaucagcgcggcggCCCa -3' miRNA: 3'- cgCuuUGCUAGACGCGC--------------GUCGCG--------------GGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 119165 | 0.73 | 0.542114 |
Target: 5'- gGCGGccgccuuAACGccg-GCGCGCAGCGCgCCg -3' miRNA: 3'- -CGCU-------UUGCuagaCGCGCGUCGCGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 126628 | 0.73 | 0.523587 |
Target: 5'- cGCGGGcucUGGUCUGCGCGCAuGCGgUCUg -3' miRNA: 3'- -CGCUUu--GCUAGACGCGCGU-CGCgGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 117422 | 0.74 | 0.48543 |
Target: 5'- uCGggGCuGUCgcgGCGCGCAGgGCgCCg -3' miRNA: 3'- cGCuuUGcUAGa--CGCGCGUCgCGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 20274 | 0.81 | 0.219267 |
Target: 5'- cGCGGAGgGGaccgUCUGCGCGCuuGCGgCCCCg -3' miRNA: 3'- -CGCUUUgCU----AGACGCGCGu-CGC-GGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 150635 | 0.73 | 0.523587 |
Target: 5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3' miRNA: 3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 103081 | 0.8 | 0.230089 |
Target: 5'- cGCGAAGCG-UCcGCGuCGCAGCcgccGCCCCa -3' miRNA: 3'- -CGCUUUGCuAGaCGC-GCGUCG----CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 149649 | 0.74 | 0.48543 |
Target: 5'- gGCGGcGACgGAUCcGCGCGCAGCGCgUa -3' miRNA: 3'- -CGCU-UUG-CUAGaCGCGCGUCGCGgGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 156693 | 0.73 | 0.533309 |
Target: 5'- cGCGAugcGCGAcggGCGCGCGGCccucGCCCUc -3' miRNA: 3'- -CGCUu--UGCUagaCGCGCGUCG----CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 10599 | 0.73 | 0.55294 |
Target: 5'- cGCGAccGCGAUCcauaucGCGCGaggcauuaAGUGCCCCa -3' miRNA: 3'- -CGCUu-UGCUAGa-----CGCGCg-------UCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 159066 | 0.79 | 0.284442 |
Target: 5'- gGCG--GCGGUCgaccaaggGCcCGCAGCGCCCCg -3' miRNA: 3'- -CGCuuUGCUAGa-------CGcGCGUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 778 | 0.77 | 0.364003 |
Target: 5'- cGCGAcACGGUUcuUGCG-GUAGCGCUCCa -3' miRNA: 3'- -CGCUuUGCUAG--ACGCgCGUCGCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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