miRNA display CGI


Results 21 - 40 of 255 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 3' -56.5 NC_005264.1 + 142682 0.72 0.582766
Target:  5'- cGUGccGCGAUCUuggGCGCcgGCGGCGCgCCa -3'
miRNA:   3'- -CGCuuUGCUAGA---CGCG--CGUCGCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 7864 0.73 0.57677
Target:  5'- uGCGAGgcccccacguucgcuGCGcAUCUGCGCGCGuacGaCGUCCCc -3'
miRNA:   3'- -CGCUU---------------UGC-UAGACGCGCGU---C-GCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 117422 0.74 0.48543
Target:  5'- uCGggGCuGUCgcgGCGCGCAGgGCgCCg -3'
miRNA:   3'- cGCuuUGcUAGa--CGCGCGUCgCGgGG- -5'
24613 3' -56.5 NC_005264.1 + 159066 0.79 0.284442
Target:  5'- gGCG--GCGGUCgaccaaggGCcCGCAGCGCCCCg -3'
miRNA:   3'- -CGCuuUGCUAGa-------CGcGCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 93545 0.71 0.65727
Target:  5'- gGCGGAACua-CUGCGCaaagcuccuuguuucGC-GCGCCCCa -3'
miRNA:   3'- -CGCUUUGcuaGACGCG---------------CGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 113865 0.72 0.609879
Target:  5'- uGCGAGGaagaGuUCUGCgccuacugcuuggaGCGCAGCGgCCCg -3'
miRNA:   3'- -CGCUUUg---CuAGACG--------------CGCGUCGCgGGG- -5'
24613 3' -56.5 NC_005264.1 + 131069 0.73 0.55294
Target:  5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3'
miRNA:   3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 103081 0.8 0.230089
Target:  5'- cGCGAAGCG-UCcGCGuCGCAGCcgccGCCCCa -3'
miRNA:   3'- -CGCUUUGCuAGaCGC-GCGUCG----CGGGG- -5'
24613 3' -56.5 NC_005264.1 + 61470 0.72 0.602833
Target:  5'- aGCGccguuCGuUCUaGCGCGCcgacGCGCCCCg -3'
miRNA:   3'- -CGCuuu--GCuAGA-CGCGCGu---CGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 20274 0.81 0.219267
Target:  5'- cGCGGAGgGGaccgUCUGCGCGCuuGCGgCCCCg -3'
miRNA:   3'- -CGCUUUgCU----AGACGCGCGu-CGC-GGGG- -5'
24613 3' -56.5 NC_005264.1 + 10599 0.73 0.55294
Target:  5'- cGCGAccGCGAUCcauaucGCGCGaggcauuaAGUGCCCCa -3'
miRNA:   3'- -CGCUu-UGCUAGa-----CGCGCg-------UCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 56397 0.72 0.592786
Target:  5'- gGCGcGACGAUCgcauaucgaGCGCGGCGCCg- -3'
miRNA:   3'- -CGCuUUGCUAGacg------CGCGUCGCGGgg -5'
24613 3' -56.5 NC_005264.1 + 150635 0.73 0.523587
Target:  5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3'
miRNA:   3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 117005 0.74 0.508176
Target:  5'- -gGggGCGGUCUGCGCGgcgcaugacgaguaCAGCGCgaucagcgcggcggCCCa -3'
miRNA:   3'- cgCuuUGCUAGACGCGC--------------GUCGCG--------------GGG- -5'
24613 3' -56.5 NC_005264.1 + 152291 0.76 0.380028
Target:  5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3'
miRNA:   3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5'
24613 3' -56.5 NC_005264.1 + 76349 0.77 0.347687
Target:  5'- cGCGcgGCGA-CUGCGCGCAGgCGCguugguaCCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCGCGUC-GCG-------GGG- -5'
24613 3' -56.5 NC_005264.1 + 32281 0.71 0.673346
Target:  5'- aGCGAGAC---CUGCGCGUAGCacacGCgCCg -3'
miRNA:   3'- -CGCUUUGcuaGACGCGCGUCG----CGgGG- -5'
24613 3' -56.5 NC_005264.1 + 86972 0.71 0.663306
Target:  5'- -gGGGACGAgacccuguuUCUGgaGuCGCAGCGCCUCg -3'
miRNA:   3'- cgCUUUGCU---------AGACg-C-GCGUCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 3409 0.72 0.633074
Target:  5'- aGCGGAACGAccauggaagGCG-GC-GCGCCCCa -3'
miRNA:   3'- -CGCUUUGCUaga------CGCgCGuCGCGGGG- -5'
24613 3' -56.5 NC_005264.1 + 131034 0.72 0.622984
Target:  5'- cGCGucACGAcCUGCG-GCGGCGaCCgCCg -3'
miRNA:   3'- -CGCuuUGCUaGACGCgCGUCGC-GG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.