Results 41 - 60 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24613 | 3' | -56.5 | NC_005264.1 | + | 128516 | 0.71 | 0.653242 |
Target: 5'- cGCGucAGCGAgUCaGCcagcgucagGCGCGGCGCCCUc -3' miRNA: 3'- -CGCu-UUGCU-AGaCG---------CGCGUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 131069 | 0.73 | 0.55294 |
Target: 5'- gGCGAAGCGcccgcgaaccAUCccgGUGCGagccaaaGGCGCCCCu -3' miRNA: 3'- -CGCUUUGC----------UAGa--CGCGCg------UCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 103081 | 0.8 | 0.230089 |
Target: 5'- cGCGAAGCG-UCcGCGuCGCAGCcgccGCCCCa -3' miRNA: 3'- -CGCUUUGCuAGaCGC-GCGUCG----CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 66861 | 0.71 | 0.643162 |
Target: 5'- cGCGAAAUaGAUC-GCGCGCGGagagcaGCCgCg -3' miRNA: 3'- -CGCUUUG-CUAGaCGCGCGUCg-----CGGgG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 20274 | 0.81 | 0.219267 |
Target: 5'- cGCGGAGgGGaccgUCUGCGCGCuuGCGgCCCCg -3' miRNA: 3'- -CGCUUUgCU----AGACGCGCGu-CGC-GGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 59998 | 0.69 | 0.761199 |
Target: 5'- aGCGAGACGG-CcGCGUgGCcGCGgCCCa -3' miRNA: 3'- -CGCUUUGCUaGaCGCG-CGuCGCgGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 76349 | 0.77 | 0.347687 |
Target: 5'- cGCGcgGCGA-CUGCGCGCAGgCGCguugguaCCCg -3' miRNA: 3'- -CGCuuUGCUaGACGCGCGUC-GCG-------GGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 33049 | 0.69 | 0.751764 |
Target: 5'- cGCGAcucagcuaaGAUaAUCUGCGacguCGCGGUGCCCg -3' miRNA: 3'- -CGCU---------UUGcUAGACGC----GCGUCGCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 121896 | 0.7 | 0.742228 |
Target: 5'- uGCGGcuGCGAUCgaccgGgGCGCGGCGCg-- -3' miRNA: 3'- -CGCUu-UGCUAGa----CgCGCGUCGCGggg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 15474 | 0.71 | 0.683352 |
Target: 5'- cGCGAAagcgGCGAUCgcgGCGgGCAuGgGCCUg -3' miRNA: 3'- -CGCUU----UGCUAGa--CGCgCGU-CgCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 127325 | 0.71 | 0.683352 |
Target: 5'- cGUGGgcGACGGgggcacCUGCGcCGCGGCGUCgCCg -3' miRNA: 3'- -CGCU--UUGCUa-----GACGC-GCGUCGCGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 32281 | 0.71 | 0.673346 |
Target: 5'- aGCGAGAC---CUGCGCGUAGCacacGCgCCg -3' miRNA: 3'- -CGCUUUGcuaGACGCGCGUCG----CGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 86972 | 0.71 | 0.663306 |
Target: 5'- -gGGGACGAgacccuguuUCUGgaGuCGCAGCGCCUCg -3' miRNA: 3'- cgCUUUGCU---------AGACg-C-GCGUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 132208 | 0.72 | 0.622984 |
Target: 5'- aCGAccuACGcgCUGCGCGCGGauccguCGCCgCCg -3' miRNA: 3'- cGCUu--UGCuaGACGCGCGUC------GCGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 61470 | 0.72 | 0.602833 |
Target: 5'- aGCGccguuCGuUCUaGCGCGCcgacGCGCCCCg -3' miRNA: 3'- -CGCuuu--GCuAGA-CGCGCGu---CGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 142682 | 0.72 | 0.582766 |
Target: 5'- cGUGccGCGAUCUuggGCGCcgGCGGCGCgCCa -3' miRNA: 3'- -CGCuuUGCUAGA---CGCG--CGUCGCGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 7864 | 0.73 | 0.57677 |
Target: 5'- uGCGAGgcccccacguucgcuGCGcAUCUGCGCGCGuacGaCGUCCCc -3' miRNA: 3'- -CGCUU---------------UGC-UAGACGCGCGU---C-GCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 150635 | 0.73 | 0.523587 |
Target: 5'- gGCGAGGCG----GCGCGCAuCGCCCUg -3' miRNA: 3'- -CGCUUUGCuagaCGCGCGUcGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 117005 | 0.74 | 0.508176 |
Target: 5'- -gGggGCGGUCUGCGCGgcgcaugacgaguaCAGCGCgaucagcgcggcggCCCa -3' miRNA: 3'- cgCuuUGCUAGACGCGC--------------GUCGCG--------------GGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 152291 | 0.76 | 0.380028 |
Target: 5'- gGCGAAcgcGCGAUCcGCGCcccugaggGCGGCGCCgCa -3' miRNA: 3'- -CGCUU---UGCUAGaCGCG--------CGUCGCGGgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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