Results 1 - 20 of 255 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24613 | 3' | -56.5 | NC_005264.1 | + | 104807 | 0.66 | 0.891513 |
Target: 5'- cGCGAGACGAgcggGCGCcGCAcGaCGgCCUg -3' miRNA: 3'- -CGCUUUGCUaga-CGCG-CGU-C-GCgGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 39449 | 0.66 | 0.904284 |
Target: 5'- cCGggGCGGUggaaagcaugCUGCGaCGC-GCGCUCa -3' miRNA: 3'- cGCuuUGCUA----------GACGC-GCGuCGCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 12100 | 0.66 | 0.904284 |
Target: 5'- cGCGAAcaaguACGccCcGCGCGCgaccuuuggcgGGCaGCCCCg -3' miRNA: 3'- -CGCUU-----UGCuaGaCGCGCG-----------UCG-CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 109625 | 0.66 | 0.904284 |
Target: 5'- gGCGuGGGCGGgggGCGCGaCGGUugcaacucgcgGCCCCg -3' miRNA: 3'- -CGC-UUUGCUagaCGCGC-GUCG-----------CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 80508 | 0.66 | 0.904284 |
Target: 5'- aGCGAGAacAUCgccgcgGUGCGCAacgucGuCGCCCCc -3' miRNA: 3'- -CGCUUUgcUAGa-----CGCGCGU-----C-GCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 13289 | 0.66 | 0.898011 |
Target: 5'- aGCGAGGCGGgu--CGUGgAGCuCCCCg -3' miRNA: 3'- -CGCUUUGCUagacGCGCgUCGcGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 31007 | 0.66 | 0.897371 |
Target: 5'- cGCGGGA-GAucaucucUCUGgGCGaCGGUGCCgCCu -3' miRNA: 3'- -CGCUUUgCU-------AGACgCGC-GUCGCGG-GG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 108668 | 0.66 | 0.891513 |
Target: 5'- cCGAGGCGAggUUG-GCGguGUGCgCCa -3' miRNA: 3'- cGCUUUGCUa-GACgCGCguCGCGgGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 106246 | 0.66 | 0.891513 |
Target: 5'- --cAGAUGggCcGCGCGUAGCGCCa- -3' miRNA: 3'- cgcUUUGCuaGaCGCGCGUCGCGGgg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 40174 | 0.66 | 0.909736 |
Target: 5'- gGCGGccaucgcGACGAaugUCaGCGCGCc-CGCCCUc -3' miRNA: 3'- -CGCU-------UUGCU---AGaCGCGCGucGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 63671 | 0.66 | 0.91033 |
Target: 5'- gGUGGGugGcUCUGUagauagaaacagGCGCGGCaagGUCCCg -3' miRNA: 3'- -CGCUUugCuAGACG------------CGCGUCG---CGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 7861 | 0.66 | 0.916146 |
Target: 5'- -aGAuuGugGGg--GCgGCGuCGGCGCCCCa -3' miRNA: 3'- cgCU--UugCUagaCG-CGC-GUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 43797 | 0.66 | 0.921731 |
Target: 5'- uGCGggGCGcaguuUCUGUcgcgauauaGCGUGGCGCgCa -3' miRNA: 3'- -CGCuuUGCu----AGACG---------CGCGUCGCGgGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 58860 | 0.66 | 0.921183 |
Target: 5'- ---uGACGGUUUcuucggccguaggGUGCGCAGCGCCa- -3' miRNA: 3'- cgcuUUGCUAGA-------------CGCGCGUCGCGGgg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 119367 | 0.66 | 0.918408 |
Target: 5'- uGUcAAGCGAgcUCUGCGCGCGaagaucaaacacaacGCGCUUa -3' miRNA: 3'- -CGcUUUGCU--AGACGCGCGU---------------CGCGGGg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 10519 | 0.66 | 0.916146 |
Target: 5'- cGCcGAGCGGgucCUGUGCgGCGcCGCCCUc -3' miRNA: 3'- -CGcUUUGCUa--GACGCG-CGUcGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 159016 | 0.66 | 0.916146 |
Target: 5'- -aGGAGCaGGUCUccGCGCGCAGggaGCaCCUc -3' miRNA: 3'- cgCUUUG-CUAGA--CGCGCGUCg--CG-GGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 65513 | 0.66 | 0.916146 |
Target: 5'- aGUGAucGGCGAcCUGCuuggcacCGgGGCGCCCUc -3' miRNA: 3'- -CGCU--UUGCUaGACGc------GCgUCGCGGGG- -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 45790 | 0.66 | 0.916146 |
Target: 5'- aGCGGcuauuGCGGUCUGgGcCGCcGCGCUg- -3' miRNA: 3'- -CGCUu----UGCUAGACgC-GCGuCGCGGgg -5' |
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24613 | 3' | -56.5 | NC_005264.1 | + | 43904 | 0.66 | 0.916146 |
Target: 5'- -gGAGACGAUa---GCGCGGCcgucGCCUCg -3' miRNA: 3'- cgCUUUGCUAgacgCGCGUCG----CGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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