miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 5' -57.3 NC_005264.1 + 66178 0.66 0.871621
Target:  5'- cCGGggGUGCGcuaacgccGCgCGCGACGGUUUu -3'
miRNA:   3'- -GCCuuCGCGUcc------CGaGUGCUGCCAAA- -5'
24613 5' -57.3 NC_005264.1 + 87620 0.66 0.871621
Target:  5'- aCGGccgccGCGCAGGGCcgaugcagcCGCGugGGg-- -3'
miRNA:   3'- -GCCuu---CGCGUCCCGa--------GUGCugCCaaa -5'
24613 5' -57.3 NC_005264.1 + 35783 0.66 0.871621
Target:  5'- gCGGAgGGCGCGGuGGCgccgUCGUGGCGGg-- -3'
miRNA:   3'- -GCCU-UCGCGUC-CCG----AGUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 154809 0.66 0.871621
Target:  5'- gCGGAgGGCGCGGuGGCgccgUCGUGGCGGg-- -3'
miRNA:   3'- -GCCU-UCGCGUC-CCG----AGUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 117840 0.66 0.869427
Target:  5'- gGGAGGCGCGGcGGagugcgcaugcaaggCAUGGCGGa-- -3'
miRNA:   3'- gCCUUCGCGUC-CCga-------------GUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 7259 0.66 0.859699
Target:  5'- gCGGAggucGGCGCcaggacgaagacggcGGGGCcuaGCGACGGg-- -3'
miRNA:   3'- -GCCU----UCGCG---------------UCCCGag-UGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 126286 0.66 0.859699
Target:  5'- gCGGAggucGGCGCcaggacgaagacggcGGGGCcuaGCGACGGg-- -3'
miRNA:   3'- -GCCU----UCGCG---------------UCCCGag-UGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 127194 0.66 0.856636
Target:  5'- gCGcGAAGCGCAGGuacaacgugccCUCGCaGCGGUUg -3'
miRNA:   3'- -GC-CUUCGCGUCCc----------GAGUGcUGCCAAa -5'
24613 5' -57.3 NC_005264.1 + 45762 0.66 0.848839
Target:  5'- aGGAccccuGCGCGGGGCgCGCGGagUGGg-- -3'
miRNA:   3'- gCCUu----CGCGUCCCGaGUGCU--GCCaaa -5'
24613 5' -57.3 NC_005264.1 + 79880 0.66 0.840849
Target:  5'- aCGGggGCGCGGcGGCgaccgUCGCaGGCGa--- -3'
miRNA:   3'- -GCCuuCGCGUC-CCG-----AGUG-CUGCcaaa -5'
24613 5' -57.3 NC_005264.1 + 80363 0.66 0.840849
Target:  5'- uGGAGGCGguGGuGUUUGCGGugaUGGUUc -3'
miRNA:   3'- gCCUUCGCguCC-CGAGUGCU---GCCAAa -5'
24613 5' -57.3 NC_005264.1 + 83092 0.66 0.840039
Target:  5'- aCGGAacaacguAGCGCAGGuGUaCGcCGACGGg-- -3'
miRNA:   3'- -GCCU-------UCGCGUCC-CGaGU-GCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 124969 0.67 0.832671
Target:  5'- uCGGAAccccucGCGCAGGGCagcggcgcauUCGCgGAUGGg-- -3'
miRNA:   3'- -GCCUU------CGCGUCCCG----------AGUG-CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 5943 0.67 0.832671
Target:  5'- uCGGAAccccucGCGCAGGGCagcggcgcauUCGCgGAUGGg-- -3'
miRNA:   3'- -GCCUU------CGCGUCCCG----------AGUG-CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 4182 0.67 0.789237
Target:  5'- gGGAAGCGgAGGGUcCGaggGACGGg-- -3'
miRNA:   3'- gCCUUCGCgUCCCGaGUg--CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 123209 0.67 0.789237
Target:  5'- gGGAAGCGgAGGGUcCGaggGACGGg-- -3'
miRNA:   3'- gCCUUCGCgUCCCGaGUg--CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 133269 0.68 0.770827
Target:  5'- aGGAcgcAGCGaCGGGGCUgGCGauaaacaaaaggGCGGUg- -3'
miRNA:   3'- gCCU---UCGC-GUCCCGAgUGC------------UGCCAaa -5'
24613 5' -57.3 NC_005264.1 + 3471 0.68 0.770827
Target:  5'- uCGGggGCGauGGGCUugccgccgcaCGCGGCGGg-- -3'
miRNA:   3'- -GCCuuCGCguCCCGA----------GUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 122498 0.68 0.770827
Target:  5'- uCGGggGCGauGGGCUugccgccgcaCGCGGCGGg-- -3'
miRNA:   3'- -GCCuuCGCguCCCGA----------GUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 160450 0.68 0.761434
Target:  5'- aGGccGGCGCcGGGCUCcugcggGCGACGGc-- -3'
miRNA:   3'- gCCu-UCGCGuCCCGAG------UGCUGCCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.