Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24613 | 5' | -57.3 | NC_005264.1 | + | 84193 | 0.72 | 0.551574 |
Target: 5'- gGGAcgaGGCaCAGGGCcgcCGCGGCGGUUa -3' miRNA: 3'- gCCU---UCGcGUCCCGa--GUGCUGCCAAa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 87620 | 0.66 | 0.871621 |
Target: 5'- aCGGccgccGCGCAGGGCcgaugcagcCGCGugGGg-- -3' miRNA: 3'- -GCCuu---CGCGUCCCGa--------GUGCugCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 88123 | 0.68 | 0.751929 |
Target: 5'- gCGGuuGCGUAcGGGCUgAUGGcCGGUUa -3' miRNA: 3'- -GCCuuCGCGU-CCCGAgUGCU-GCCAAa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 100093 | 0.71 | 0.611978 |
Target: 5'- uGGcGGcCGCGGGGCUCAgCGACGa--- -3' miRNA: 3'- gCCuUC-GCGUCCCGAGU-GCUGCcaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 109612 | 0.72 | 0.522021 |
Target: 5'- aCGGAAagcaaauggcguGgGCGGGGggCGCGACGGUUg -3' miRNA: 3'- -GCCUU------------CgCGUCCCgaGUGCUGCCAAa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 116409 | 0.73 | 0.455737 |
Target: 5'- aGGccgacgucGAGCGCAGGGCggcgugcagccUCGCGGCGGa-- -3' miRNA: 3'- gCC--------UUCGCGUCCCG-----------AGUGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 116433 | 0.69 | 0.712956 |
Target: 5'- uGGggGCGUcuggccgcgGGGGCgacgaUCGgGGCGGUUg -3' miRNA: 3'- gCCuuCGCG---------UCCCG-----AGUgCUGCCAAa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 117840 | 0.66 | 0.869427 |
Target: 5'- gGGAGGCGCGGcGGagugcgcaugcaaggCAUGGCGGa-- -3' miRNA: 3'- gCCUUCGCGUC-CCga-------------GUGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 122327 | 0.71 | 0.611978 |
Target: 5'- gGGGAGUGaGGGGCUUccgaACGGCGGg-- -3' miRNA: 3'- gCCUUCGCgUCCCGAG----UGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 122498 | 0.68 | 0.770827 |
Target: 5'- uCGGggGCGauGGGCUugccgccgcaCGCGGCGGg-- -3' miRNA: 3'- -GCCuuCGCguCCCGA----------GUGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 123209 | 0.67 | 0.789237 |
Target: 5'- gGGAAGCGgAGGGUcCGaggGACGGg-- -3' miRNA: 3'- gCCUUCGCgUCCCGaGUg--CUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 124969 | 0.67 | 0.832671 |
Target: 5'- uCGGAAccccucGCGCAGGGCagcggcgcauUCGCgGAUGGg-- -3' miRNA: 3'- -GCCUU------CGCGUCCCG----------AGUG-CUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 125813 | 0.68 | 0.751929 |
Target: 5'- gGGAugGGUGCGGcGGCUCAgagggGACGGUc- -3' miRNA: 3'- gCCU--UCGCGUC-CCGAGUg----CUGCCAaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 126286 | 0.66 | 0.859699 |
Target: 5'- gCGGAggucGGCGCcaggacgaagacggcGGGGCcuaGCGACGGg-- -3' miRNA: 3'- -GCCU----UCGCG---------------UCCCGag-UGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 127194 | 0.66 | 0.856636 |
Target: 5'- gCGcGAAGCGCAGGuacaacgugccCUCGCaGCGGUUg -3' miRNA: 3'- -GC-CUUCGCGUCCc----------GAGUGcUGCCAAa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 129497 | 0.74 | 0.40186 |
Target: 5'- gCGGcGGCGCAGGGUUUggcggcgccggagGCGACGGa-- -3' miRNA: 3'- -GCCuUCGCGUCCCGAG-------------UGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 133269 | 0.68 | 0.770827 |
Target: 5'- aGGAcgcAGCGaCGGGGCUgGCGauaaacaaaaggGCGGUg- -3' miRNA: 3'- gCCU---UCGC-GUCCCGAgUGC------------UGCCAaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 150699 | 0.69 | 0.682981 |
Target: 5'- gCGcGAG-GCAGGGCUCuCGGCGGg-- -3' miRNA: 3'- -GCcUUCgCGUCCCGAGuGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 154809 | 0.66 | 0.871621 |
Target: 5'- gCGGAgGGCGCGGuGGCgccgUCGUGGCGGg-- -3' miRNA: 3'- -GCCU-UCGCGUC-CCG----AGUGCUGCCaaa -5' |
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24613 | 5' | -57.3 | NC_005264.1 | + | 155252 | 0.73 | 0.471435 |
Target: 5'- aGGAagcaucuccgcagcGGCGCGGGGUagGCGGCGGg-- -3' miRNA: 3'- gCCU--------------UCGCGUCCCGagUGCUGCCaaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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