miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24613 5' -57.3 NC_005264.1 + 64813 1.05 0.004078
Target:  5'- cCGGAAGCGCAGGGCUCACGACGGUUUc -3'
miRNA:   3'- -GCCUUCGCGUCCCGAGUGCUGCCAAA- -5'
24613 5' -57.3 NC_005264.1 + 122498 0.68 0.770827
Target:  5'- uCGGggGCGauGGGCUugccgccgcaCGCGGCGGg-- -3'
miRNA:   3'- -GCCuuCGCguCCCGA----------GUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 125813 0.68 0.751929
Target:  5'- gGGAugGGUGCGGcGGCUCAgagggGACGGUc- -3'
miRNA:   3'- gCCU--UCGCGUC-CCGAGUg----CUGCCAaa -5'
24613 5' -57.3 NC_005264.1 + 88123 0.68 0.751929
Target:  5'- gCGGuuGCGUAcGGGCUgAUGGcCGGUUa -3'
miRNA:   3'- -GCCuuCGCGU-CCCGAgUGCU-GCCAAa -5'
24613 5' -57.3 NC_005264.1 + 116433 0.69 0.712956
Target:  5'- uGGggGCGUcuggccgcgGGGGCgacgaUCGgGGCGGUUg -3'
miRNA:   3'- gCCuuCGCG---------UCCCG-----AGUgCUGCCAAa -5'
24613 5' -57.3 NC_005264.1 + 150699 0.69 0.682981
Target:  5'- gCGcGAG-GCAGGGCUCuCGGCGGg-- -3'
miRNA:   3'- -GCcUUCgCGUCCCGAGuGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 154809 0.66 0.871621
Target:  5'- gCGGAgGGCGCGGuGGCgccgUCGUGGCGGg-- -3'
miRNA:   3'- -GCCU-UCGCGUC-CCG----AGUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 126286 0.66 0.859699
Target:  5'- gCGGAggucGGCGCcaggacgaagacggcGGGGCcuaGCGACGGg-- -3'
miRNA:   3'- -GCCU----UCGCG---------------UCCCGag-UGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 124969 0.67 0.832671
Target:  5'- uCGGAAccccucGCGCAGGGCagcggcgcauUCGCgGAUGGg-- -3'
miRNA:   3'- -GCCUU------CGCGUCCCG----------AGUG-CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 133269 0.68 0.770827
Target:  5'- aGGAcgcAGCGaCGGGGCUgGCGauaaacaaaaggGCGGUg- -3'
miRNA:   3'- gCCU---UCGC-GUCCCGAgUGC------------UGCCAaa -5'
24613 5' -57.3 NC_005264.1 + 19430 0.69 0.722824
Target:  5'- cCGGGuguGGcCGCGGGGCgCGgGugGGUUUc -3'
miRNA:   3'- -GCCU---UC-GCGUCCCGaGUgCugCCAAA- -5'
24613 5' -57.3 NC_005264.1 + 162248 0.71 0.571557
Target:  5'- gGGggGCuacgGCGGGGCUgGCgGGCGGa-- -3'
miRNA:   3'- gCCuuCG----CGUCCCGAgUG-CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 80363 0.66 0.840849
Target:  5'- uGGAGGCGguGGuGUUUGCGGugaUGGUUc -3'
miRNA:   3'- gCCUUCGCguCC-CGAGUGCU---GCCAAa -5'
24613 5' -57.3 NC_005264.1 + 122327 0.71 0.611978
Target:  5'- gGGGAGUGaGGGGCUUccgaACGGCGGg-- -3'
miRNA:   3'- gCCUUCGCgUCCCGAG----UGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 160450 0.68 0.761434
Target:  5'- aGGccGGCGCcGGGCUCcugcggGCGACGGc-- -3'
miRNA:   3'- gCCu-UCGCGuCCCGAG------UGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 45762 0.66 0.848839
Target:  5'- aGGAccccuGCGCGGGGCgCGCGGagUGGg-- -3'
miRNA:   3'- gCCUu----CGCGUCCCGaGUGCU--GCCaaa -5'
24613 5' -57.3 NC_005264.1 + 156603 0.7 0.662776
Target:  5'- aCGGAGGCggcaagucucGCGGcGGC-CGCGGCGGg-- -3'
miRNA:   3'- -GCCUUCG----------CGUC-CCGaGUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 123209 0.67 0.789237
Target:  5'- gGGAAGCGgAGGGUcCGaggGACGGg-- -3'
miRNA:   3'- gCCUUCGCgUCCCGaGUg--CUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 37576 0.7 0.662776
Target:  5'- aCGGAGGCggcaagucucGCGGcGGC-CGCGGCGGg-- -3'
miRNA:   3'- -GCCUUCG----------CGUC-CCGaGUGCUGCCaaa -5'
24613 5' -57.3 NC_005264.1 + 31673 0.69 0.682981
Target:  5'- gCGcGAG-GCAGGGCUCuCGGCGGg-- -3'
miRNA:   3'- -GCcUUCgCGUCCCGAGuGCUGCCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.