miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24614 5' -61.5 NC_005264.1 + 40938 0.66 0.717913
Target:  5'- cGCGCCGCGCC-CCgGUCgAUCg---- -3'
miRNA:   3'- -UGCGGCGCGGcGGgUAGgUAGgcacu -5'
24614 5' -61.5 NC_005264.1 + 159965 0.66 0.717913
Target:  5'- cGCGCCGCGCC-CCgGUCgAUCg---- -3'
miRNA:   3'- -UGCGGCGCGGcGGgUAGgUAGgcacu -5'
24614 5' -61.5 NC_005264.1 + 125255 0.66 0.717913
Target:  5'- cCGCCGCgGCCGCCgCGagacuugccgccUCCGUCgCGg-- -3'
miRNA:   3'- uGCGGCG-CGGCGG-GU------------AGGUAG-GCacu -5'
24614 5' -61.5 NC_005264.1 + 86742 0.66 0.717913
Target:  5'- gAUGCCGCGCuguucgCGCCCGUagagCCGUcGAc -3'
miRNA:   3'- -UGCGGCGCG------GCGGGUAgguaGGCA-CU- -5'
24614 5' -61.5 NC_005264.1 + 6228 0.66 0.717913
Target:  5'- cCGCCGCgGCCGCCgCGagacuugccgccUCCGUCgCGg-- -3'
miRNA:   3'- uGCGGCG-CGGCGG-GU------------AGGUAG-GCacu -5'
24614 5' -61.5 NC_005264.1 + 1908 0.66 0.708363
Target:  5'- cCGCCGCGaCUGCgggaucCCAUCC-UCCGg-- -3'
miRNA:   3'- uGCGGCGC-GGCG------GGUAGGuAGGCacu -5'
24614 5' -61.5 NC_005264.1 + 120934 0.66 0.708363
Target:  5'- cCGCCGCGaCUGCgggaucCCAUCC-UCCGg-- -3'
miRNA:   3'- uGCGGCGC-GGCG------GGUAGGuAGGCacu -5'
24614 5' -61.5 NC_005264.1 + 39124 0.66 0.708363
Target:  5'- uUGCUGCGCUucgGCCUcUCCGgccugCUGUGAg -3'
miRNA:   3'- uGCGGCGCGG---CGGGuAGGUa----GGCACU- -5'
24614 5' -61.5 NC_005264.1 + 112253 0.66 0.708363
Target:  5'- aGCGCCGgGCUGCUCAgcgCCG--CGUGc -3'
miRNA:   3'- -UGCGGCgCGGCGGGUa--GGUagGCACu -5'
24614 5' -61.5 NC_005264.1 + 105346 0.66 0.708363
Target:  5'- cCGCCGCGCgCGCCagCAUCUucgCCGc-- -3'
miRNA:   3'- uGCGGCGCG-GCGG--GUAGGua-GGCacu -5'
24614 5' -61.5 NC_005264.1 + 86506 0.66 0.708363
Target:  5'- uCGCCGCGCgGCCaacuUUCGUgCGUcGAc -3'
miRNA:   3'- uGCGGCGCGgCGGgu--AGGUAgGCA-CU- -5'
24614 5' -61.5 NC_005264.1 + 140175 0.66 0.708363
Target:  5'- -aGCgGCGagaCGCUCGUCC-UUCGUGGg -3'
miRNA:   3'- ugCGgCGCg--GCGGGUAGGuAGGCACU- -5'
24614 5' -61.5 NC_005264.1 + 118158 0.66 0.698754
Target:  5'- uAUGCCGUgGCCGCCCAU--GUCUGg-- -3'
miRNA:   3'- -UGCGGCG-CGGCGGGUAggUAGGCacu -5'
24614 5' -61.5 NC_005264.1 + 142592 0.66 0.698754
Target:  5'- -gGCCGCGCCgcaaccccuGCCCAcCCGUCaCGc-- -3'
miRNA:   3'- ugCGGCGCGG---------CGGGUaGGUAG-GCacu -5'
24614 5' -61.5 NC_005264.1 + 22282 0.66 0.698754
Target:  5'- aAC-CCGCGCgCGCCCuucugCCAUCCc--- -3'
miRNA:   3'- -UGcGGCGCG-GCGGGua---GGUAGGcacu -5'
24614 5' -61.5 NC_005264.1 + 146273 0.66 0.698754
Target:  5'- uGCGCCgccgccccgGCGCCGCCCA-CCGcgCUGa-- -3'
miRNA:   3'- -UGCGG---------CGCGGCGGGUaGGUa-GGCacu -5'
24614 5' -61.5 NC_005264.1 + 33911 0.66 0.689093
Target:  5'- aGCGCCGCcuuucuGCCGCCaggCUGggaaggCCGUGGc -3'
miRNA:   3'- -UGCGGCG------CGGCGGguaGGUa-----GGCACU- -5'
24614 5' -61.5 NC_005264.1 + 124495 0.66 0.689093
Target:  5'- cCGCCcCGCCGCCCAg-CAUCaCGg-- -3'
miRNA:   3'- uGCGGcGCGGCGGGUagGUAG-GCacu -5'
24614 5' -61.5 NC_005264.1 + 5468 0.66 0.689093
Target:  5'- cCGCCcCGCCGCCCAg-CAUCaCGg-- -3'
miRNA:   3'- uGCGGcGCGGCGGGUagGUAG-GCacu -5'
24614 5' -61.5 NC_005264.1 + 59962 0.66 0.679389
Target:  5'- gUGuCCGCGCCGCUCAgCCAcgcggCgGUGGc -3'
miRNA:   3'- uGC-GGCGCGGCGGGUaGGUa----GgCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.