miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24616 3' -55.6 NC_005264.1 + 90457 0.68 0.872858
Target:  5'- -gGUGGGCGGCGCGg------CCGUCa -3'
miRNA:   3'- cgCACUUGCCGCGCaagucgaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 5276 0.68 0.872858
Target:  5'- cGCGgccGGACGGCGgGgcggCGGCUgacCCGUg -3'
miRNA:   3'- -CGCa--CUUGCCGCgCaa--GUCGA---GGCAg -5'
24616 3' -55.6 NC_005264.1 + 124303 0.68 0.872858
Target:  5'- cGCGgccGGACGGCGgGgcggCGGCUgacCCGUg -3'
miRNA:   3'- -CGCa--CUUGCCGCgCaa--GUCGA---GGCAg -5'
24616 3' -55.6 NC_005264.1 + 127406 0.68 0.857954
Target:  5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3'
miRNA:   3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5'
24616 3' -55.6 NC_005264.1 + 8379 0.68 0.857954
Target:  5'- gGCGccgGAcGCGGCGCGUUgaAGCUgCCGg- -3'
miRNA:   3'- -CGCa--CU-UGCCGCGCAAg-UCGA-GGCag -5'
24616 3' -55.6 NC_005264.1 + 26265 0.68 0.84941
Target:  5'- cGgGUcGAuuccGCGGCGCGUuccuggaucgcgaUCGGCUCCcgcGUCu -3'
miRNA:   3'- -CgCA-CU----UGCCGCGCA-------------AGUCGAGG---CAG- -5'
24616 3' -55.6 NC_005264.1 + 131614 0.68 0.843049
Target:  5'- cGCGUGGGCGcGCGCGgagaagaacagauggUCAcGcCUCgGUCu -3'
miRNA:   3'- -CGCACUUGC-CGCGCa--------------AGU-C-GAGgCAG- -5'
24616 3' -55.6 NC_005264.1 + 155774 0.69 0.834105
Target:  5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 36748 0.69 0.834105
Target:  5'- aGCGc-GACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 78015 0.69 0.825784
Target:  5'- uGCGUGcauGACGGCGaggcUUC-GCUCCGUg -3'
miRNA:   3'- -CGCAC---UUGCCGCgc--AAGuCGAGGCAg -5'
24616 3' -55.6 NC_005264.1 + 147023 0.69 0.825784
Target:  5'- aGCGcGAACGGCGuCGUUCG---UCGUCg -3'
miRNA:   3'- -CGCaCUUGCCGC-GCAAGUcgaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 132587 0.7 0.781734
Target:  5'- ---aGAGCGGCGCGggCGGgaCCGg- -3'
miRNA:   3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5'
24616 3' -55.6 NC_005264.1 + 107980 0.7 0.781734
Target:  5'- aGCGUGAccgUGGaUGCGggCGGCUCCcagGUCa -3'
miRNA:   3'- -CGCACUu--GCC-GCGCaaGUCGAGG---CAG- -5'
24616 3' -55.6 NC_005264.1 + 13560 0.7 0.781734
Target:  5'- ---aGAGCGGCGCGggCGGgaCCGg- -3'
miRNA:   3'- cgcaCUUGCCGCGCaaGUCgaGGCag -5'
24616 3' -55.6 NC_005264.1 + 123229 0.7 0.772492
Target:  5'- cCGUGucuaGGagcaaGCGcgCAGCUCCGUCu -3'
miRNA:   3'- cGCACuug-CCg----CGCaaGUCGAGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 47615 0.7 0.753649
Target:  5'- cGCGcGAACGGCGCGUaCAuauGUUCUGg- -3'
miRNA:   3'- -CGCaCUUGCCGCGCAaGU---CGAGGCag -5'
24616 3' -55.6 NC_005264.1 + 7057 0.7 0.744064
Target:  5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 126084 0.7 0.744064
Target:  5'- aGCGgcGACGGCGcCGgcCGGCgCCGUCg -3'
miRNA:   3'- -CGCacUUGCCGC-GCaaGUCGaGGCAG- -5'
24616 3' -55.6 NC_005264.1 + 154920 0.71 0.735355
Target:  5'- cGCGUGGACGcGCGCGUUgcUAGCcagagcgugggggaCGUCg -3'
miRNA:   3'- -CGCACUUGC-CGCGCAA--GUCGag------------GCAG- -5'
24616 3' -55.6 NC_005264.1 + 61037 0.71 0.714766
Target:  5'- aGCGUaGAuuuugaccACGGCaucgaGCGUcUCGGCUCCGUUc -3'
miRNA:   3'- -CGCA-CU--------UGCCG-----CGCA-AGUCGAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.