miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24617 3' -55.8 NC_005264.1 + 8775 0.66 0.937207
Target:  5'- gCCUCuacGGCGGCGCGgUUGuaUCCCUcgugauAGGCg -3'
miRNA:   3'- -GGAGc--UCGCCGUGU-AGC--AGGGA------UCUG- -5'
24617 3' -55.8 NC_005264.1 + 30841 0.66 0.936727
Target:  5'- gCUCGcgucgucgucggcGGCGGCGCGcCG-CCCggUAGGCa -3'
miRNA:   3'- gGAGC-------------UCGCCGUGUaGCaGGG--AUCUG- -5'
24617 3' -55.8 NC_005264.1 + 149867 0.66 0.936727
Target:  5'- gCUCGcgucgucgucggcGGCGGCGCGcCG-CCCggUAGGCa -3'
miRNA:   3'- gGAGC-------------UCGCCGUGUaGCaGGG--AUCUG- -5'
24617 3' -55.8 NC_005264.1 + 36583 0.66 0.933799
Target:  5'- uCCUCGcGCGGCAUgagaaagaaggcgAUCGccgugucucgcguugUCCC-AGACa -3'
miRNA:   3'- -GGAGCuCGCCGUG-------------UAGC---------------AGGGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 155610 0.66 0.933799
Target:  5'- uCCUCGcGCGGCAUgagaaagaaggcgAUCGccgugucucgcguugUCCC-AGACa -3'
miRNA:   3'- -GGAGCuCGCCGUG-------------UAGC---------------AGGGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 5339 0.66 0.932303
Target:  5'- --aCGaAGCGGuCGC-UCGUCCC-GGGCg -3'
miRNA:   3'- ggaGC-UCGCC-GUGuAGCAGGGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 124366 0.66 0.932303
Target:  5'- --aCGaAGCGGuCGC-UCGUCCC-GGGCg -3'
miRNA:   3'- ggaGC-UCGCC-GUGuAGCAGGGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 22582 0.66 0.921792
Target:  5'- cCCUgGaAGCGGCGuCAcCGUCgCCgAGACc -3'
miRNA:   3'- -GGAgC-UCGCCGU-GUaGCAG-GGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 58028 0.67 0.910346
Target:  5'- gCCgUCGuGCGGCGCccgcUCGUCUCgcgaaagaggAGACu -3'
miRNA:   3'- -GG-AGCuCGCCGUGu---AGCAGGGa---------UCUG- -5'
24617 3' -55.8 NC_005264.1 + 128971 0.67 0.910346
Target:  5'- gCCUCGAGCGGaCGCuccaCGUUCUUcaGCu -3'
miRNA:   3'- -GGAGCUCGCC-GUGua--GCAGGGAucUG- -5'
24617 3' -55.8 NC_005264.1 + 37996 0.67 0.904275
Target:  5'- uUCUCGAGCGuucGUACAUCG-CCgagAGGCc -3'
miRNA:   3'- -GGAGCUCGC---CGUGUAGCaGGga-UCUG- -5'
24617 3' -55.8 NC_005264.1 + 153332 0.67 0.904275
Target:  5'- cCCUCGAG-GGCGCcgCG-CCU--GACg -3'
miRNA:   3'- -GGAGCUCgCCGUGuaGCaGGGauCUG- -5'
24617 3' -55.8 NC_005264.1 + 34305 0.67 0.904275
Target:  5'- cCCUCGAG-GGCGCcgCG-CCU--GACg -3'
miRNA:   3'- -GGAGCUCgCCGUGuaGCaGGGauCUG- -5'
24617 3' -55.8 NC_005264.1 + 31609 0.67 0.897974
Target:  5'- --gCGAgGCGGCgcGCAUCG-CCCUGcGACc -3'
miRNA:   3'- ggaGCU-CGCCG--UGUAGCaGGGAU-CUG- -5'
24617 3' -55.8 NC_005264.1 + 156271 0.67 0.897974
Target:  5'- cCCUgGGG-GGCGCAUCa-CCgUGGACg -3'
miRNA:   3'- -GGAgCUCgCCGUGUAGcaGGgAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 37244 0.67 0.897974
Target:  5'- cCCUgGGG-GGCGCAUCa-CCgUGGACg -3'
miRNA:   3'- -GGAgCUCgCCGUGUAGcaGGgAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 150636 0.67 0.897974
Target:  5'- --gCGAgGCGGCgcGCAUCG-CCCUGcGACc -3'
miRNA:   3'- ggaGCU-CGCCG--UGUAGCaGGGAU-CUG- -5'
24617 3' -55.8 NC_005264.1 + 106238 0.67 0.891447
Target:  5'- aCUCGAGCGGuCGCGaggcgcUCGcgCCUgcuGACg -3'
miRNA:   3'- gGAGCUCGCC-GUGU------AGCa-GGGau-CUG- -5'
24617 3' -55.8 NC_005264.1 + 120003 0.67 0.891447
Target:  5'- cCCUgGGGCGGCAgGUgGgccucccCCCUcgcGGACc -3'
miRNA:   3'- -GGAgCUCGCCGUgUAgCa------GGGA---UCUG- -5'
24617 3' -55.8 NC_005264.1 + 35043 0.67 0.891447
Target:  5'- gCUCGcGCG--ACGUCGUCagCCUAGACa -3'
miRNA:   3'- gGAGCuCGCcgUGUAGCAG--GGAUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.