miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24617 3' -55.8 NC_005264.1 + 69114 1.12 0.00233
Target:  5'- uCCUCGAGCGGCACAUCGUCCCUAGACa -3'
miRNA:   3'- -GGAGCUCGCCGUGUAGCAGGGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 6983 0.71 0.682238
Target:  5'- ---aGAGUGGCGCgggGUUGUCCCUgcGGGCg -3'
miRNA:   3'- ggagCUCGCCGUG---UAGCAGGGA--UCUG- -5'
24617 3' -55.8 NC_005264.1 + 123719 0.71 0.712121
Target:  5'- --gCGAGUGGCGCcgCGUCCac-GACa -3'
miRNA:   3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5'
24617 3' -55.8 NC_005264.1 + 4692 0.71 0.712121
Target:  5'- --gCGAGUGGCGCcgCGUCCac-GACa -3'
miRNA:   3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5'
24617 3' -55.8 NC_005264.1 + 114808 0.7 0.741402
Target:  5'- gCCUCGAcaGCuucuGGCACAcgugugccaagUUGUCCCUGGGa -3'
miRNA:   3'- -GGAGCU--CG----CCGUGU-----------AGCAGGGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 122294 0.7 0.779093
Target:  5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3'
miRNA:   3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 3267 0.7 0.779093
Target:  5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3'
miRNA:   3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 149811 0.69 0.788215
Target:  5'- --aCGAGCGGC-CGUaggGUCCCgcGACa -3'
miRNA:   3'- ggaGCUCGCCGuGUAg--CAGGGauCUG- -5'
24617 3' -55.8 NC_005264.1 + 93501 0.69 0.797199
Target:  5'- --gCGGcCGGCGCGUCGuUCCCUucGGACc -3'
miRNA:   3'- ggaGCUcGCCGUGUAGC-AGGGA--UCUG- -5'
24617 3' -55.8 NC_005264.1 + 4278 0.68 0.846964
Target:  5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3'
miRNA:   3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5'
24617 3' -55.8 NC_005264.1 + 123305 0.68 0.846964
Target:  5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3'
miRNA:   3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5'
24617 3' -55.8 NC_005264.1 + 146264 0.68 0.847754
Target:  5'- aCUUaCGAGUGGUACGcgGUCCCUuacGACg -3'
miRNA:   3'- -GGA-GCUCGCCGUGUagCAGGGAu--CUG- -5'
24617 3' -55.8 NC_005264.1 + 51778 0.68 0.855551
Target:  5'- gCUCGcgcGGCGGCACuUCGUCC---GGCg -3'
miRNA:   3'- gGAGC---UCGCCGUGuAGCAGGgauCUG- -5'
24617 3' -55.8 NC_005264.1 + 136694 0.68 0.863149
Target:  5'- uCCUCGccGCGGCcugggACAUCauggCCCUGGAg -3'
miRNA:   3'- -GGAGCu-CGCCG-----UGUAGca--GGGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 977 0.68 0.863149
Target:  5'- cCCUgGGGCGGCAgGUgGgccuccCCCUcgcGGACc -3'
miRNA:   3'- -GGAgCUCGCCGUgUAgCa-----GGGA---UCUG- -5'
24617 3' -55.8 NC_005264.1 + 127341 0.68 0.870543
Target:  5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3'
miRNA:   3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 8314 0.68 0.870543
Target:  5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3'
miRNA:   3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 5142 0.67 0.884696
Target:  5'- uUCUCGAugcGCGGCcgcgccGCAUCGUCCgaAGcCu -3'
miRNA:   3'- -GGAGCU---CGCCG------UGUAGCAGGgaUCuG- -5'
24617 3' -55.8 NC_005264.1 + 35043 0.67 0.891447
Target:  5'- gCUCGcGCG--ACGUCGUCagCCUAGACa -3'
miRNA:   3'- gGAGCuCGCcgUGUAGCAG--GGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 106238 0.67 0.891447
Target:  5'- aCUCGAGCGGuCGCGaggcgcUCGcgCCUgcuGACg -3'
miRNA:   3'- gGAGCUCGCC-GUGU------AGCa-GGGau-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.