Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 5142 | 0.67 | 0.884696 |
Target: 5'- uUCUCGAugcGCGGCcgcgccGCAUCGUCCgaAGcCu -3' miRNA: 3'- -GGAGCU---CGCCG------UGUAGCAGGgaUCuG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 8314 | 0.68 | 0.870543 |
Target: 5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3' miRNA: 3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 127341 | 0.68 | 0.870543 |
Target: 5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3' miRNA: 3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 136694 | 0.68 | 0.863149 |
Target: 5'- uCCUCGccGCGGCcugggACAUCauggCCCUGGAg -3' miRNA: 3'- -GGAGCu-CGCCG-----UGUAGca--GGGAUCUg -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 977 | 0.68 | 0.863149 |
Target: 5'- cCCUgGGGCGGCAgGUgGgccuccCCCUcgcGGACc -3' miRNA: 3'- -GGAgCUCGCCGUgUAgCa-----GGGA---UCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 51778 | 0.68 | 0.855551 |
Target: 5'- gCUCGcgcGGCGGCACuUCGUCC---GGCg -3' miRNA: 3'- gGAGC---UCGCCGUGuAGCAGGgauCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 146264 | 0.68 | 0.847754 |
Target: 5'- aCUUaCGAGUGGUACGcgGUCCCUuacGACg -3' miRNA: 3'- -GGA-GCUCGCCGUGUagCAGGGAu--CUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 123305 | 0.68 | 0.846964 |
Target: 5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3' miRNA: 3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 4278 | 0.68 | 0.846964 |
Target: 5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3' miRNA: 3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 93501 | 0.69 | 0.797199 |
Target: 5'- --gCGGcCGGCGCGUCGuUCCCUucGGACc -3' miRNA: 3'- ggaGCUcGCCGUGUAGC-AGGGA--UCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 149811 | 0.69 | 0.788215 |
Target: 5'- --aCGAGCGGC-CGUaggGUCCCgcGACa -3' miRNA: 3'- ggaGCUCGCCGuGUAg--CAGGGauCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 3267 | 0.7 | 0.779093 |
Target: 5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3' miRNA: 3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 122294 | 0.7 | 0.779093 |
Target: 5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3' miRNA: 3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 114808 | 0.7 | 0.741402 |
Target: 5'- gCCUCGAcaGCuucuGGCACAcgugugccaagUUGUCCCUGGGa -3' miRNA: 3'- -GGAGCU--CG----CCGUGU-----------AGCAGGGAUCUg -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 123719 | 0.71 | 0.712121 |
Target: 5'- --gCGAGUGGCGCcgCGUCCac-GACa -3' miRNA: 3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 4692 | 0.71 | 0.712121 |
Target: 5'- --gCGAGUGGCGCcgCGUCCac-GACa -3' miRNA: 3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 6983 | 0.71 | 0.682238 |
Target: 5'- ---aGAGUGGCGCgggGUUGUCCCUgcGGGCg -3' miRNA: 3'- ggagCUCGCCGUG---UAGCAGGGA--UCUG- -5' |
|||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 69114 | 1.12 | 0.00233 |
Target: 5'- uCCUCGAGCGGCACAUCGUCCCUAGACa -3' miRNA: 3'- -GGAGCUCGCCGUGUAGCAGGGAUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home