Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24617 | 3' | -55.8 | NC_005264.1 | + | 977 | 0.68 | 0.863149 |
Target: 5'- cCCUgGGGCGGCAgGUgGgccuccCCCUcgcGGACc -3' miRNA: 3'- -GGAgCUCGCCGUgUAgCa-----GGGA---UCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 3267 | 0.7 | 0.779093 |
Target: 5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3' miRNA: 3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 4278 | 0.68 | 0.846964 |
Target: 5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3' miRNA: 3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 4692 | 0.71 | 0.712121 |
Target: 5'- --gCGAGUGGCGCcgCGUCCac-GACa -3' miRNA: 3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 5142 | 0.67 | 0.884696 |
Target: 5'- uUCUCGAugcGCGGCcgcgccGCAUCGUCCgaAGcCu -3' miRNA: 3'- -GGAGCU---CGCCG------UGUAGCAGGgaUCuG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 5339 | 0.66 | 0.932303 |
Target: 5'- --aCGaAGCGGuCGC-UCGUCCC-GGGCg -3' miRNA: 3'- ggaGC-UCGCC-GUGuAGCAGGGaUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 6983 | 0.71 | 0.682238 |
Target: 5'- ---aGAGUGGCGCgggGUUGUCCCUgcGGGCg -3' miRNA: 3'- ggagCUCGCCGUG---UAGCAGGGA--UCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 8314 | 0.68 | 0.870543 |
Target: 5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3' miRNA: 3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 8775 | 0.66 | 0.937207 |
Target: 5'- gCCUCuacGGCGGCGCGgUUGuaUCCCUcgugauAGGCg -3' miRNA: 3'- -GGAGc--UCGCCGUGU-AGC--AGGGA------UCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 22582 | 0.66 | 0.921792 |
Target: 5'- cCCUgGaAGCGGCGuCAcCGUCgCCgAGACc -3' miRNA: 3'- -GGAgC-UCGCCGU-GUaGCAG-GGaUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 30841 | 0.66 | 0.936727 |
Target: 5'- gCUCGcgucgucgucggcGGCGGCGCGcCG-CCCggUAGGCa -3' miRNA: 3'- gGAGC-------------UCGCCGUGUaGCaGGG--AUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 31609 | 0.67 | 0.897974 |
Target: 5'- --gCGAgGCGGCgcGCAUCG-CCCUGcGACc -3' miRNA: 3'- ggaGCU-CGCCG--UGUAGCaGGGAU-CUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 34305 | 0.67 | 0.904275 |
Target: 5'- cCCUCGAG-GGCGCcgCG-CCU--GACg -3' miRNA: 3'- -GGAGCUCgCCGUGuaGCaGGGauCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 35043 | 0.67 | 0.891447 |
Target: 5'- gCUCGcGCG--ACGUCGUCagCCUAGACa -3' miRNA: 3'- gGAGCuCGCcgUGUAGCAG--GGAUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 36583 | 0.66 | 0.933799 |
Target: 5'- uCCUCGcGCGGCAUgagaaagaaggcgAUCGccgugucucgcguugUCCC-AGACa -3' miRNA: 3'- -GGAGCuCGCCGUG-------------UAGC---------------AGGGaUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 37244 | 0.67 | 0.897974 |
Target: 5'- cCCUgGGG-GGCGCAUCa-CCgUGGACg -3' miRNA: 3'- -GGAgCUCgCCGUGUAGcaGGgAUCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 37996 | 0.67 | 0.904275 |
Target: 5'- uUCUCGAGCGuucGUACAUCG-CCgagAGGCc -3' miRNA: 3'- -GGAGCUCGC---CGUGUAGCaGGga-UCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 51778 | 0.68 | 0.855551 |
Target: 5'- gCUCGcgcGGCGGCACuUCGUCC---GGCg -3' miRNA: 3'- gGAGC---UCGCCGUGuAGCAGGgauCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 58028 | 0.67 | 0.910346 |
Target: 5'- gCCgUCGuGCGGCGCccgcUCGUCUCgcgaaagaggAGACu -3' miRNA: 3'- -GG-AGCuCGCCGUGu---AGCAGGGa---------UCUG- -5' |
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24617 | 3' | -55.8 | NC_005264.1 | + | 69114 | 1.12 | 0.00233 |
Target: 5'- uCCUCGAGCGGCACAUCGUCCCUAGACa -3' miRNA: 3'- -GGAGCUCGCCGUGUAGCAGGGAUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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