miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24617 3' -55.8 NC_005264.1 + 123305 0.68 0.846964
Target:  5'- aCCgCGgggcGGCGGCAgagagcacguccuUAUCGUCCCUGG-Cg -3'
miRNA:   3'- -GGaGC----UCGCCGU-------------GUAGCAGGGAUCuG- -5'
24617 3' -55.8 NC_005264.1 + 153332 0.67 0.904275
Target:  5'- cCCUCGAG-GGCGCcgCG-CCU--GACg -3'
miRNA:   3'- -GGAGCUCgCCGUGuaGCaGGGauCUG- -5'
24617 3' -55.8 NC_005264.1 + 124366 0.66 0.932303
Target:  5'- --aCGaAGCGGuCGC-UCGUCCC-GGGCg -3'
miRNA:   3'- ggaGC-UCGCC-GUGuAGCAGGGaUCUG- -5'
24617 3' -55.8 NC_005264.1 + 8775 0.66 0.937207
Target:  5'- gCCUCuacGGCGGCGCGgUUGuaUCCCUcgugauAGGCg -3'
miRNA:   3'- -GGAGc--UCGCCGUGU-AGC--AGGGA------UCUG- -5'
24617 3' -55.8 NC_005264.1 + 69114 1.12 0.00233
Target:  5'- uCCUCGAGCGGCACAUCGUCCCUAGACa -3'
miRNA:   3'- -GGAGCUCGCCGUGUAGCAGGGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 6983 0.71 0.682238
Target:  5'- ---aGAGUGGCGCgggGUUGUCCCUgcGGGCg -3'
miRNA:   3'- ggagCUCGCCGUG---UAGCAGGGA--UCUG- -5'
24617 3' -55.8 NC_005264.1 + 123719 0.71 0.712121
Target:  5'- --gCGAGUGGCGCcgCGUCCac-GACa -3'
miRNA:   3'- ggaGCUCGCCGUGuaGCAGGgauCUG- -5'
24617 3' -55.8 NC_005264.1 + 114808 0.7 0.741402
Target:  5'- gCCUCGAcaGCuucuGGCACAcgugugccaagUUGUCCCUGGGa -3'
miRNA:   3'- -GGAGCU--CG----CCGUGU-----------AGCAGGGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 122294 0.7 0.779093
Target:  5'- uCCagGAGCcgcaGCGCcaCGUCCCUGGGCg -3'
miRNA:   3'- -GGagCUCGc---CGUGuaGCAGGGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 37996 0.67 0.904275
Target:  5'- uUCUCGAGCGuucGUACAUCG-CCgagAGGCc -3'
miRNA:   3'- -GGAGCUCGC---CGUGUAGCaGGga-UCUG- -5'
24617 3' -55.8 NC_005264.1 + 120003 0.67 0.891447
Target:  5'- cCCUgGGGCGGCAgGUgGgccucccCCCUcgcGGACc -3'
miRNA:   3'- -GGAgCUCGCCGUgUAgCa------GGGA---UCUG- -5'
24617 3' -55.8 NC_005264.1 + 106238 0.67 0.891447
Target:  5'- aCUCGAGCGGuCGCGaggcgcUCGcgCCUgcuGACg -3'
miRNA:   3'- gGAGCUCGCC-GUGU------AGCa-GGGau-CUG- -5'
24617 3' -55.8 NC_005264.1 + 146264 0.68 0.847754
Target:  5'- aCUUaCGAGUGGUACGcgGUCCCUuacGACg -3'
miRNA:   3'- -GGA-GCUCGCCGUGUagCAGGGAu--CUG- -5'
24617 3' -55.8 NC_005264.1 + 150636 0.67 0.897974
Target:  5'- --gCGAgGCGGCgcGCAUCG-CCCUGcGACc -3'
miRNA:   3'- ggaGCU-CGCCG--UGUAGCaGGGAU-CUG- -5'
24617 3' -55.8 NC_005264.1 + 136694 0.68 0.863149
Target:  5'- uCCUCGccGCGGCcugggACAUCauggCCCUGGAg -3'
miRNA:   3'- -GGAGCu-CGCCG-----UGUAGca--GGGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 35043 0.67 0.891447
Target:  5'- gCUCGcGCG--ACGUCGUCagCCUAGACa -3'
miRNA:   3'- gGAGCuCGCcgUGUAGCAG--GGAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 156271 0.67 0.897974
Target:  5'- cCCUgGGG-GGCGCAUCa-CCgUGGACg -3'
miRNA:   3'- -GGAgCUCgCCGUGUAGcaGGgAUCUG- -5'
24617 3' -55.8 NC_005264.1 + 58028 0.67 0.910346
Target:  5'- gCCgUCGuGCGGCGCccgcUCGUCUCgcgaaagaggAGACu -3'
miRNA:   3'- -GG-AGCuCGCCGUGu---AGCAGGGa---------UCUG- -5'
24617 3' -55.8 NC_005264.1 + 127341 0.68 0.870543
Target:  5'- aCCUgCGccGCGGCGucgcCGUCGUCcCCUAGGg -3'
miRNA:   3'- -GGA-GCu-CGCCGU----GUAGCAG-GGAUCUg -5'
24617 3' -55.8 NC_005264.1 + 5142 0.67 0.884696
Target:  5'- uUCUCGAugcGCGGCcgcgccGCAUCGUCCgaAGcCu -3'
miRNA:   3'- -GGAGCU---CGCCG------UGUAGCAGGgaUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.