miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24617 5' -58.7 NC_005264.1 + 13071 0.66 0.853066
Target:  5'- uUCGGgCGGG-GAGACcuUGGGCUcCGaGGa -3'
miRNA:   3'- -AGCCgGUCCuCUCUGc-ACUCGA-GC-CC- -5'
24617 5' -58.7 NC_005264.1 + 2897 0.66 0.853066
Target:  5'- gCGGCgGGGAGGgcGACGgcgaGAGCgaCGGa -3'
miRNA:   3'- aGCCGgUCCUCU--CUGCa---CUCGa-GCCc -5'
24617 5' -58.7 NC_005264.1 + 121923 0.66 0.853066
Target:  5'- gCGGCgGGGAGGgcGACGgcgaGAGCgaCGGa -3'
miRNA:   3'- aGCCGgUCCUCU--CUGCa---CUCGa-GCCc -5'
24617 5' -58.7 NC_005264.1 + 132098 0.66 0.853066
Target:  5'- uUCGGgCGGG-GAGACcuUGGGCUcCGaGGa -3'
miRNA:   3'- -AGCCgGUCCuCUCUGc-ACUCGA-GC-CC- -5'
24617 5' -58.7 NC_005264.1 + 131595 0.66 0.837529
Target:  5'- -aGGUguGGAGGGagcggcgcGCGUGGGCgcgCGcGGa -3'
miRNA:   3'- agCCGguCCUCUC--------UGCACUCGa--GC-CC- -5'
24617 5' -58.7 NC_005264.1 + 88225 0.66 0.837529
Target:  5'- -aGcGCCAGGGGGaACGUGGGgUCaGGc -3'
miRNA:   3'- agC-CGGUCCUCUcUGCACUCgAGcCC- -5'
24617 5' -58.7 NC_005264.1 + 51615 0.66 0.829495
Target:  5'- aUGGCCGGG-GAGGUGUaggccgaagaGAGCUUGGu -3'
miRNA:   3'- aGCCGGUCCuCUCUGCA----------CUCGAGCCc -5'
24617 5' -58.7 NC_005264.1 + 151601 0.66 0.829495
Target:  5'- cUCuuCUAGGGGGGACaagGGGUUCGGGu -3'
miRNA:   3'- -AGccGGUCCUCUCUGca-CUCGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 120633 0.66 0.821293
Target:  5'- -gGGCCAGGGauacGGGACGccggUGGGCgCGGc -3'
miRNA:   3'- agCCGGUCCU----CUCUGC----ACUCGaGCCc -5'
24617 5' -58.7 NC_005264.1 + 1606 0.66 0.821293
Target:  5'- -gGGCCAGGGauacGGGACGccggUGGGCgCGGc -3'
miRNA:   3'- agCCGGUCCU----CUCUGC----ACUCGaGCCc -5'
24617 5' -58.7 NC_005264.1 + 128702 0.66 0.81293
Target:  5'- -aGGCCuuGGGGGAGGCG--GGCUCGc- -3'
miRNA:   3'- agCCGG--UCCUCUCUGCacUCGAGCcc -5'
24617 5' -58.7 NC_005264.1 + 150555 0.66 0.81293
Target:  5'- -gGGCgGGGAGGGcCGuUGGGgUgGGGg -3'
miRNA:   3'- agCCGgUCCUCUCuGC-ACUCgAgCCC- -5'
24617 5' -58.7 NC_005264.1 + 9675 0.66 0.81293
Target:  5'- -aGGCCuuGGGGGAGGCG--GGCUCGc- -3'
miRNA:   3'- agCCGG--UCCUCUCUGCacUCGAGCcc -5'
24617 5' -58.7 NC_005264.1 + 80603 0.66 0.81293
Target:  5'- cUCGGcCCGGGGGGGAgCGUu--CUUGGGc -3'
miRNA:   3'- -AGCC-GGUCCUCUCU-GCAcucGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 8119 0.66 0.81293
Target:  5'- aUCGGaaCGGGcugaGGAGACGccGAGgUCGGGu -3'
miRNA:   3'- -AGCCg-GUCC----UCUCUGCa-CUCgAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 31528 0.66 0.81293
Target:  5'- -gGGCgGGGAGGGcCGuUGGGgUgGGGg -3'
miRNA:   3'- agCCGgUCCUCUCuGC-ACUCgAgCCC- -5'
24617 5' -58.7 NC_005264.1 + 127146 0.66 0.81293
Target:  5'- aUCGGaaCGGGcugaGGAGACGccGAGgUCGGGu -3'
miRNA:   3'- -AGCCg-GUCC----UCUCUGCa-CUCgAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 80190 0.67 0.80183
Target:  5'- gCGGUCuugaaAGGAGAGGCGcGggacgugugugagaAGCUUGGGc -3'
miRNA:   3'- aGCCGG-----UCCUCUCUGCaC--------------UCGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 73064 0.67 0.778019
Target:  5'- gCGGCC---AGAGACGUGGcGUagUCGGGc -3'
miRNA:   3'- aGCCGGuccUCUCUGCACU-CG--AGCCC- -5'
24617 5' -58.7 NC_005264.1 + 39229 0.67 0.778019
Target:  5'- cUGGCgGGGAGGGccuGCGUucccGGCUCGGc -3'
miRNA:   3'- aGCCGgUCCUCUC---UGCAc---UCGAGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.