miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24617 5' -58.7 NC_005264.1 + 39229 0.67 0.778019
Target:  5'- cUGGCgGGGAGGGccuGCGUucccGGCUCGGc -3'
miRNA:   3'- aGCCGgUCCUCUC---UGCAc---UCGAGCCc -5'
24617 5' -58.7 NC_005264.1 + 73064 0.67 0.778019
Target:  5'- gCGGCC---AGAGACGUGGcGUagUCGGGc -3'
miRNA:   3'- aGCCGGuccUCUCUGCACU-CG--AGCCC- -5'
24617 5' -58.7 NC_005264.1 + 13696 0.68 0.741154
Target:  5'- aUGGcCCAGG-GAGAacuggcagcuCGUGcGGCUUGGGa -3'
miRNA:   3'- aGCC-GGUCCuCUCU----------GCAC-UCGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 119654 0.68 0.731693
Target:  5'- aCGGCCgaacccAGGAcGuGACucgaGAGCUCGGGc -3'
miRNA:   3'- aGCCGG------UCCU-CuCUGca--CUCGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 124991 0.68 0.731693
Target:  5'- gCGGCgCAuucgcGGAuggGAGACGUGGGCcaaGGGg -3'
miRNA:   3'- aGCCG-GU-----CCU---CUCUGCACUCGag-CCC- -5'
24617 5' -58.7 NC_005264.1 + 162337 0.68 0.722153
Target:  5'- -gGGCCAcGGAGGGAgGagggagGAGCggGGGg -3'
miRNA:   3'- agCCGGU-CCUCUCUgCa-----CUCGagCCC- -5'
24617 5' -58.7 NC_005264.1 + 43310 0.68 0.722153
Target:  5'- -gGGCCAcGGAGGGAgGagggagGAGCggGGGg -3'
miRNA:   3'- agCCGGU-CCUCUCUgCa-----CUCGagCCC- -5'
24617 5' -58.7 NC_005264.1 + 97151 0.68 0.716393
Target:  5'- aCGGCCuacGGAGAGACGcgaGAGCcacgugugaacuaGGGg -3'
miRNA:   3'- aGCCGGu--CCUCUCUGCa--CUCGag-----------CCC- -5'
24617 5' -58.7 NC_005264.1 + 3631 0.68 0.702863
Target:  5'- -gGGCgGGGuggggguuucugGGAGGCGguuUGAGCUgGGGg -3'
miRNA:   3'- agCCGgUCC------------UCUCUGC---ACUCGAgCCC- -5'
24617 5' -58.7 NC_005264.1 + 74817 0.7 0.624107
Target:  5'- uUCGGCCccGAGGaACGUGGGCaccaGGGg -3'
miRNA:   3'- -AGCCGGucCUCUcUGCACUCGag--CCC- -5'
24617 5' -58.7 NC_005264.1 + 25738 0.7 0.614211
Target:  5'- cUCGGUCGcGGAGAGGCcaGUGAuGCUCacgcgcguuGGGg -3'
miRNA:   3'- -AGCCGGU-CCUCUCUG--CACU-CGAG---------CCC- -5'
24617 5' -58.7 NC_005264.1 + 162235 0.71 0.56505
Target:  5'- cCGGCgGGGGGGGGgG-GGGCUacggCGGGg -3'
miRNA:   3'- aGCCGgUCCUCUCUgCaCUCGA----GCCC- -5'
24617 5' -58.7 NC_005264.1 + 43208 0.71 0.56505
Target:  5'- cCGGCgGGGGGGGGgG-GGGCUacggCGGGg -3'
miRNA:   3'- aGCCGgUCCUCUCUgCaCUCGA----GCCC- -5'
24617 5' -58.7 NC_005264.1 + 67755 0.71 0.545651
Target:  5'- cUCGGCgCAGGucgcAGuuGCGUG-GCUUGGGg -3'
miRNA:   3'- -AGCCG-GUCC----UCucUGCACuCGAGCCC- -5'
24617 5' -58.7 NC_005264.1 + 51824 0.75 0.361255
Target:  5'- uUCGaaCCAGGAGAGGgGUGGGCgcuccgCGGGc -3'
miRNA:   3'- -AGCc-GGUCCUCUCUgCACUCGa-----GCCC- -5'
24617 5' -58.7 NC_005264.1 + 69149 1.11 0.001411
Target:  5'- aUCGGCCAGGAGAGACGUGAGCUCGGGg -3'
miRNA:   3'- -AGCCGGUCCUCUCUGCACUCGAGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.