Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24617 | 5' | -58.7 | NC_005264.1 | + | 1606 | 0.66 | 0.821293 |
Target: 5'- -gGGCCAGGGauacGGGACGccggUGGGCgCGGc -3' miRNA: 3'- agCCGGUCCU----CUCUGC----ACUCGaGCCc -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 2897 | 0.66 | 0.853066 |
Target: 5'- gCGGCgGGGAGGgcGACGgcgaGAGCgaCGGa -3' miRNA: 3'- aGCCGgUCCUCU--CUGCa---CUCGa-GCCc -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 3631 | 0.68 | 0.702863 |
Target: 5'- -gGGCgGGGuggggguuucugGGAGGCGguuUGAGCUgGGGg -3' miRNA: 3'- agCCGgUCC------------UCUCUGC---ACUCGAgCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 8119 | 0.66 | 0.81293 |
Target: 5'- aUCGGaaCGGGcugaGGAGACGccGAGgUCGGGu -3' miRNA: 3'- -AGCCg-GUCC----UCUCUGCa-CUCgAGCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 9675 | 0.66 | 0.81293 |
Target: 5'- -aGGCCuuGGGGGAGGCG--GGCUCGc- -3' miRNA: 3'- agCCGG--UCCUCUCUGCacUCGAGCcc -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 13071 | 0.66 | 0.853066 |
Target: 5'- uUCGGgCGGG-GAGACcuUGGGCUcCGaGGa -3' miRNA: 3'- -AGCCgGUCCuCUCUGc-ACUCGA-GC-CC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 13696 | 0.68 | 0.741154 |
Target: 5'- aUGGcCCAGG-GAGAacuggcagcuCGUGcGGCUUGGGa -3' miRNA: 3'- aGCC-GGUCCuCUCU----------GCAC-UCGAGCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 25738 | 0.7 | 0.614211 |
Target: 5'- cUCGGUCGcGGAGAGGCcaGUGAuGCUCacgcgcguuGGGg -3' miRNA: 3'- -AGCCGGU-CCUCUCUG--CACU-CGAG---------CCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 31528 | 0.66 | 0.81293 |
Target: 5'- -gGGCgGGGAGGGcCGuUGGGgUgGGGg -3' miRNA: 3'- agCCGgUCCUCUCuGC-ACUCgAgCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 39229 | 0.67 | 0.778019 |
Target: 5'- cUGGCgGGGAGGGccuGCGUucccGGCUCGGc -3' miRNA: 3'- aGCCGgUCCUCUC---UGCAc---UCGAGCCc -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 43208 | 0.71 | 0.56505 |
Target: 5'- cCGGCgGGGGGGGGgG-GGGCUacggCGGGg -3' miRNA: 3'- aGCCGgUCCUCUCUgCaCUCGA----GCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 43310 | 0.68 | 0.722153 |
Target: 5'- -gGGCCAcGGAGGGAgGagggagGAGCggGGGg -3' miRNA: 3'- agCCGGU-CCUCUCUgCa-----CUCGagCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 51615 | 0.66 | 0.829495 |
Target: 5'- aUGGCCGGG-GAGGUGUaggccgaagaGAGCUUGGu -3' miRNA: 3'- aGCCGGUCCuCUCUGCA----------CUCGAGCCc -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 51824 | 0.75 | 0.361255 |
Target: 5'- uUCGaaCCAGGAGAGGgGUGGGCgcuccgCGGGc -3' miRNA: 3'- -AGCc-GGUCCUCUCUgCACUCGa-----GCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 66219 | 0.67 | 0.778019 |
Target: 5'- gCGGCCAGcGAaGGACuuggcGAGCUgCGGGc -3' miRNA: 3'- aGCCGGUC-CUcUCUGca---CUCGA-GCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 67755 | 0.71 | 0.545651 |
Target: 5'- cUCGGCgCAGGucgcAGuuGCGUG-GCUUGGGg -3' miRNA: 3'- -AGCCG-GUCC----UCucUGCACuCGAGCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 69149 | 1.11 | 0.001411 |
Target: 5'- aUCGGCCAGGAGAGACGUGAGCUCGGGg -3' miRNA: 3'- -AGCCGGUCCUCUCUGCACUCGAGCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 73064 | 0.67 | 0.778019 |
Target: 5'- gCGGCC---AGAGACGUGGcGUagUCGGGc -3' miRNA: 3'- aGCCGGuccUCUCUGCACU-CG--AGCCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 74817 | 0.7 | 0.624107 |
Target: 5'- uUCGGCCccGAGGaACGUGGGCaccaGGGg -3' miRNA: 3'- -AGCCGGucCUCUcUGCACUCGag--CCC- -5' |
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24617 | 5' | -58.7 | NC_005264.1 | + | 80190 | 0.67 | 0.80183 |
Target: 5'- gCGGUCuugaaAGGAGAGGCGcGggacgugugugagaAGCUUGGGc -3' miRNA: 3'- aGCCGG-----UCCUCUCUGCaC--------------UCGAGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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