miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24619 3' -55.3 NC_005264.1 + 78705 0.66 0.919358
Target:  5'- aCUUCcCGGGGCUcGCgagCUGCCGCGAGa -3'
miRNA:   3'- -GAAGaGUCUUGAcCGg--GACGGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 46398 0.66 0.919358
Target:  5'- -gUCgUCAGGGCcaGGUCC-GCCGCGAGg -3'
miRNA:   3'- gaAG-AGUCUUGa-CCGGGaCGGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 115121 0.66 0.919358
Target:  5'- gUUgUCcguGAGCUGGCgCCUGCCgagcucgccaaACGAGa -3'
miRNA:   3'- gAAgAGu--CUUGACCG-GGACGG-----------UGCUU- -5'
24619 3' -55.3 NC_005264.1 + 87744 0.66 0.913484
Target:  5'- --gCUCGGcGCcGGCgCCUGCCGCa-- -3'
miRNA:   3'- gaaGAGUCuUGaCCG-GGACGGUGcuu -5'
24619 3' -55.3 NC_005264.1 + 112343 0.66 0.901001
Target:  5'- ----gCAGAACUGGCCgCggccgugGCCACGu- -3'
miRNA:   3'- gaagaGUCUUGACCGG-Ga------CGGUGCuu -5'
24619 3' -55.3 NC_005264.1 + 27668 0.67 0.880478
Target:  5'- --gCUCGGAccgagguacgcgGCUGGCCuCUGCCucgcCGAc -3'
miRNA:   3'- gaaGAGUCU------------UGACCGG-GACGGu---GCUu -5'
24619 3' -55.3 NC_005264.1 + 2658 0.68 0.824868
Target:  5'- -gUCUaCAGAGuccuCUGGCCCcGaCCGCGAGg -3'
miRNA:   3'- gaAGA-GUCUU----GACCGGGaC-GGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 121685 0.68 0.824868
Target:  5'- -gUCUaCAGAGuccuCUGGCCCcGaCCGCGAGg -3'
miRNA:   3'- gaAGA-GUCUU----GACCGGGaC-GGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 114107 0.7 0.720802
Target:  5'- ---gUCGGGcCagucGGCCCUGCCGCGAAu -3'
miRNA:   3'- gaagAGUCUuGa---CCGGGACGGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 94132 0.71 0.679918
Target:  5'- --gCUCAGAACUGGCCUaaugGaCUGCGAGu -3'
miRNA:   3'- gaaGAGUCUUGACCGGGa---C-GGUGCUU- -5'
24619 3' -55.3 NC_005264.1 + 59757 0.71 0.669571
Target:  5'- aCUUCUCGGGgggcacgaACUGGCCguggCUGuCCACGGc -3'
miRNA:   3'- -GAAGAGUCU--------UGACCGG----GAC-GGUGCUu -5'
24619 3' -55.3 NC_005264.1 + 69752 1.06 0.00429
Target:  5'- aCUUCUCAGAACUGGCCCUGCCACGAAu -3'
miRNA:   3'- -GAAGAGUCUUGACCGGGACGGUGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.