Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 102789 | 0.67 | 0.82686 |
|
Target: 5'- uGUCUacguggCGCAAUucuuUUCCCCCACcaugcggcgccUCCGUCUa -3' miRNA: 3'- -CAGG------GCGUUG----AAGGGGGUG-----------AGGUAGA- -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 105904 | 0.66 | 0.873938 |
|
Target: 5'- aUCCUGCGucuccGCUUgCCCCCucuACgCCAUCUu -3' miRNA: 3'- cAGGGCGU-----UGAA-GGGGG---UGaGGUAGA- -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 119077 | 0.66 | 0.887976 |
|
Target: 5'- aGUCuCCGUaAACUguucUCCCCCacGCUCCAg-- -3' miRNA: 3'- -CAG-GGCG-UUGA----AGGGGG--UGAGGUaga -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 126362 | 0.68 | 0.791871 |
|
Target: 5'- aUCCCGCGuCUucgUCCUCCGCcUCGUCa -3' miRNA: 3'- cAGGGCGUuGA---AGGGGGUGaGGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 132404 | 0.69 | 0.74499 |
|
Target: 5'- -gCCCGCGGC-UCCCCCGagacCUCC-UCc -3' miRNA: 3'- caGGGCGUUGaAGGGGGU----GAGGuAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 154915 | 0.68 | 0.800854 |
|
Target: 5'- cGUCUCGCGGCagcguuacgUCCCCCcaguACUCCggCg -3' miRNA: 3'- -CAGGGCGUUGa--------AGGGGG----UGAGGuaGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 159084 | 0.66 | 0.892679 |
|
Target: 5'- -gCCCGCAGCgcCccggcggcaagaggCCCCGCUCCucGUCg -3' miRNA: 3'- caGGGCGUUGaaG--------------GGGGUGAGG--UAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 159645 | 0.68 | 0.764101 |
|
Target: 5'- gGUCCUGCGAaauaagcccUUCCCCGCgCCGUCg -3' miRNA: 3'- -CAGGGCGUUga-------AGGGGGUGaGGUAGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home