Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 35889 | 0.68 | 0.800854 |
|
Target: 5'- cGUCUCGCGGCagcguuacgUCCCCCcaguACUCCggCg -3' miRNA: 3'- -CAGGGCGUUGa--------AGGGGG----UGAGGuaGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 7335 | 0.68 | 0.791871 |
|
Target: 5'- aUCCCGCGuCUucgUCCUCCGCcUCGUCa -3' miRNA: 3'- cAGGGCGUuGA---AGGGGGUGaGGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 77923 | 0.68 | 0.791871 |
|
Target: 5'- uGUCCCGCGccuggcuCUUCCCgCC-CUcCCGUCc -3' miRNA: 3'- -CAGGGCGUu------GAAGGG-GGuGA-GGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 40618 | 0.68 | 0.764101 |
|
Target: 5'- gGUCCUGCGAaauaagcccUUCCCCGCgCCGUCg -3' miRNA: 3'- -CAGGGCGUUga-------AGGGGGUGaGGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 14278 | 0.69 | 0.754599 |
|
Target: 5'- uGUCCCacaaauaagGCAuggGCUcuaguuUCCCCCACgCCAUCa -3' miRNA: 3'- -CAGGG---------CGU---UGA------AGGGGGUGaGGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 13377 | 0.69 | 0.74499 |
|
Target: 5'- -gCCCGCGGC-UCCCCCGagacCUCC-UCc -3' miRNA: 3'- caGGGCGUUGaAGGGGGU----GAGGuAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 48543 | 0.69 | 0.725487 |
|
Target: 5'- cGUCCCGCGcg--CCCCCGucgcCUUCGUCg -3' miRNA: 3'- -CAGGGCGUugaaGGGGGU----GAGGUAGa -5' |
|||||||
| 24620 | 5' | -56.7 | NC_005264.1 | + | 40057 | 0.66 | 0.892679 |
|
Target: 5'- -gCCCGCAGCgcCccggcggcaagaggCCCCGCUCCucGUCg -3' miRNA: 3'- caGGGCGUUGaaG--------------GGGGUGAGG--UAGa -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home