Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24621 | 3' | -51 | NC_005264.1 | + | 113059 | 0.66 | 0.991915 |
Target: 5'- aGGUAGUCCgUGcCcuccuccaaguGUGCuAUAGCCGCGg -3' miRNA: 3'- -UUAUUAGGgACaG-----------UACG-UGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 77948 | 0.66 | 0.991915 |
Target: 5'- ----cUCCC-GUCcUGCGCGGCC-CGc -3' miRNA: 3'- uuauuAGGGaCAGuACGUGUCGGuGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 69011 | 0.66 | 0.991915 |
Target: 5'- -----gCCCUGUCGccaucGUACuguGCCACGg -3' miRNA: 3'- uuauuaGGGACAGUa----CGUGu--CGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 33528 | 0.66 | 0.991915 |
Target: 5'- ----uUCCCauaggGUCG-GCGCuGCCGCGa -3' miRNA: 3'- uuauuAGGGa----CAGUaCGUGuCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 66305 | 0.66 | 0.9918 |
Target: 5'- --gGGUCCCUG-CAcuccuguUGCGCGGCguCGu -3' miRNA: 3'- uuaUUAGGGACaGU-------ACGUGUCGguGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 22804 | 0.66 | 0.989927 |
Target: 5'- -----cCCCUGUCAgagggaccguugugGUACAGCCucaGCGa -3' miRNA: 3'- uuauuaGGGACAGUa-------------CGUGUCGG---UGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 77415 | 0.66 | 0.989375 |
Target: 5'- ----cUCCCUGUCc-GCGCGGUCgGCGu -3' miRNA: 3'- uuauuAGGGACAGuaCGUGUCGG-UGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 148329 | 0.66 | 0.989375 |
Target: 5'- uAUGGUCUgaGguugCGUGCGCGGUCGCc -3' miRNA: 3'- uUAUUAGGgaCa---GUACGUGUCGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 42098 | 0.66 | 0.989375 |
Target: 5'- ---uAUCCCUcGUCGU-CGCAGUCGCc -3' miRNA: 3'- uuauUAGGGA-CAGUAcGUGUCGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 3206 | 0.66 | 0.98789 |
Target: 5'- ---cGUUCCUGUCuucGCGUAGCCACc -3' miRNA: 3'- uuauUAGGGACAGua-CGUGUCGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 78692 | 0.67 | 0.984446 |
Target: 5'- uAGUGAUCgCgaugGUCGUGCuaACGGCCguaGCGa -3' miRNA: 3'- -UUAUUAGgGa---CAGUACG--UGUCGG---UGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 111625 | 0.67 | 0.984446 |
Target: 5'- --gGAUCCCgagGaCGUGUACcGCCGCu -3' miRNA: 3'- uuaUUAGGGa--CaGUACGUGuCGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 74131 | 0.67 | 0.982467 |
Target: 5'- --gGGUCCUcaUGcggCAUGCAC-GCCACGc -3' miRNA: 3'- uuaUUAGGG--ACa--GUACGUGuCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 7935 | 0.67 | 0.980304 |
Target: 5'- ---cGUCCacgcGUCGUcCACGGCCGCGg -3' miRNA: 3'- uuauUAGGga--CAGUAcGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 75393 | 0.67 | 0.97539 |
Target: 5'- uGGUGcgCgCCaccGUC-UGCGCGGCCGCGg -3' miRNA: 3'- -UUAUuaG-GGa--CAGuACGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 41999 | 0.68 | 0.966425 |
Target: 5'- -----aCCUUGUCuucGUGCucguCGGCCACGg -3' miRNA: 3'- uuauuaGGGACAG---UACGu---GUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 153830 | 0.68 | 0.964388 |
Target: 5'- ---cAUCCgUGUCAUGCGCgucgagugguaggacGGgCCACGa -3' miRNA: 3'- uuauUAGGgACAGUACGUG---------------UC-GGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 34804 | 0.68 | 0.964388 |
Target: 5'- ---cAUCCgUGUCAUGCGCgucgagugguaggacGGgCCACGa -3' miRNA: 3'- uuauUAGGgACAGUACGUG---------------UC-GGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 7844 | 0.68 | 0.962982 |
Target: 5'- ---cGUUCCUGUUgagGUACAGCUGCGa -3' miRNA: 3'- uuauUAGGGACAGua-CGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 158181 | 0.68 | 0.962624 |
Target: 5'- aGGUAuUCCCUGaUCGUGCucguguccgagaaGCGGCC-CGg -3' miRNA: 3'- -UUAUuAGGGAC-AGUACG-------------UGUCGGuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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