Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24621 | 3' | -51 | NC_005264.1 | + | 72066 | 1.08 | 0.008761 |
Target: 5'- aAAUAAUCCCUGUCAUGCACAGCCACGg -3' miRNA: 3'- -UUAUUAGGGACAGUACGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 124218 | 0.72 | 0.840955 |
Target: 5'- --aGAUCuCCUGUCGUGUcucGC-GCCGCGg -3' miRNA: 3'- uuaUUAG-GGACAGUACG---UGuCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 5191 | 0.72 | 0.840955 |
Target: 5'- --aGAUCuCCUGUCGUGUcucGC-GCCGCGg -3' miRNA: 3'- uuaUUAG-GGACAGUACG---UGuCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 156500 | 0.71 | 0.88814 |
Target: 5'- -----cCCCUGUCccgcguaucGCACAGCUACGg -3' miRNA: 3'- uuauuaGGGACAGua-------CGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 37473 | 0.71 | 0.88814 |
Target: 5'- -----cCCCUGUCccgcguaucGCACAGCUACGg -3' miRNA: 3'- uuauuaGGGACAGua-------CGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 154756 | 0.7 | 0.901943 |
Target: 5'- ---uGUCCCUGUuuacgccgccCGUGCccgacuGCGGCCGCGa -3' miRNA: 3'- uuauUAGGGACA----------GUACG------UGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 35730 | 0.7 | 0.901943 |
Target: 5'- ---uGUCCCUGUuuacgccgccCGUGCccgacuGCGGCCGCGa -3' miRNA: 3'- uuauUAGGGACA----------GUACG------UGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 17074 | 0.7 | 0.914106 |
Target: 5'- ---cAUCCCUGUUaggacgaAUGCGCAccGCCGCa -3' miRNA: 3'- uuauUAGGGACAG-------UACGUGU--CGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 114790 | 0.7 | 0.91472 |
Target: 5'- ---uGUCCCUGgccaaugcucCAUGCGCauuGGCCACGc -3' miRNA: 3'- uuauUAGGGACa---------GUACGUG---UCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 160251 | 0.7 | 0.931924 |
Target: 5'- --aGGUUCgCgcggGUUAUGCACGGCCACc -3' miRNA: 3'- uuaUUAGG-Ga---CAGUACGUGUCGGUGc -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 113472 | 0.69 | 0.94208 |
Target: 5'- -----cCCCgcgGUCGUGcCACGGUCGCGc -3' miRNA: 3'- uuauuaGGGa--CAGUAC-GUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 46877 | 0.69 | 0.951196 |
Target: 5'- ---cGUCCCUGUCggGCGCcgcguaccuccuAGCUGCGc -3' miRNA: 3'- uuauUAGGGACAGuaCGUG------------UCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 88323 | 0.69 | 0.956973 |
Target: 5'- gAAUAAcUCCCUGaUgAUagacauccaccagccGCGCAGCCACGu -3' miRNA: 3'- -UUAUU-AGGGAC-AgUA---------------CGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 24507 | 0.68 | 0.959299 |
Target: 5'- --gGcgCCUUGUCGcGCACGcGCCAUGa -3' miRNA: 3'- uuaUuaGGGACAGUaCGUGU-CGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 39154 | 0.68 | 0.962624 |
Target: 5'- aGGUAuUCCCUGaUCGUGCucguguccgagaaGCGGCC-CGg -3' miRNA: 3'- -UUAUuAGGGAC-AGUACG-------------UGUCGGuGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 158181 | 0.68 | 0.962624 |
Target: 5'- aGGUAuUCCCUGaUCGUGCucguguccgagaaGCGGCC-CGg -3' miRNA: 3'- -UUAUuAGGGAC-AGUACG-------------UGUCGGuGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 7844 | 0.68 | 0.962982 |
Target: 5'- ---cGUUCCUGUUgagGUACAGCUGCGa -3' miRNA: 3'- uuauUAGGGACAGua-CGUGUCGGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 34804 | 0.68 | 0.964388 |
Target: 5'- ---cAUCCgUGUCAUGCGCgucgagugguaggacGGgCCACGa -3' miRNA: 3'- uuauUAGGgACAGUACGUG---------------UC-GGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 153830 | 0.68 | 0.964388 |
Target: 5'- ---cAUCCgUGUCAUGCGCgucgagugguaggacGGgCCACGa -3' miRNA: 3'- uuauUAGGgACAGUACGUG---------------UC-GGUGC- -5' |
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24621 | 3' | -51 | NC_005264.1 | + | 41999 | 0.68 | 0.966425 |
Target: 5'- -----aCCUUGUCuucGUGCucguCGGCCACGg -3' miRNA: 3'- uuauuaGGGACAG---UACGu---GUCGGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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