miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24621 3' -51 NC_005264.1 + 88323 0.69 0.956973
Target:  5'- gAAUAAcUCCCUGaUgAUagacauccaccagccGCGCAGCCACGu -3'
miRNA:   3'- -UUAUU-AGGGAC-AgUA---------------CGUGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 42098 0.66 0.989375
Target:  5'- ---uAUCCCUcGUCGU-CGCAGUCGCc -3'
miRNA:   3'- uuauUAGGGA-CAGUAcGUGUCGGUGc -5'
24621 3' -51 NC_005264.1 + 148329 0.66 0.989375
Target:  5'- uAUGGUCUgaGguugCGUGCGCGGUCGCc -3'
miRNA:   3'- uUAUUAGGgaCa---GUACGUGUCGGUGc -5'
24621 3' -51 NC_005264.1 + 33528 0.66 0.991915
Target:  5'- ----uUCCCauaggGUCG-GCGCuGCCGCGa -3'
miRNA:   3'- uuauuAGGGa----CAGUaCGUGuCGGUGC- -5'
24621 3' -51 NC_005264.1 + 72066 1.08 0.008761
Target:  5'- aAAUAAUCCCUGUCAUGCACAGCCACGg -3'
miRNA:   3'- -UUAUUAGGGACAGUACGUGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 124218 0.72 0.840955
Target:  5'- --aGAUCuCCUGUCGUGUcucGC-GCCGCGg -3'
miRNA:   3'- uuaUUAG-GGACAGUACG---UGuCGGUGC- -5'
24621 3' -51 NC_005264.1 + 156500 0.71 0.88814
Target:  5'- -----cCCCUGUCccgcguaucGCACAGCUACGg -3'
miRNA:   3'- uuauuaGGGACAGua-------CGUGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 154756 0.7 0.901943
Target:  5'- ---uGUCCCUGUuuacgccgccCGUGCccgacuGCGGCCGCGa -3'
miRNA:   3'- uuauUAGGGACA----------GUACG------UGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 17074 0.7 0.914106
Target:  5'- ---cAUCCCUGUUaggacgaAUGCGCAccGCCGCa -3'
miRNA:   3'- uuauUAGGGACAG-------UACGUGU--CGGUGc -5'
24621 3' -51 NC_005264.1 + 78692 0.67 0.984446
Target:  5'- uAGUGAUCgCgaugGUCGUGCuaACGGCCguaGCGa -3'
miRNA:   3'- -UUAUUAGgGa---CAGUACG--UGUCGG---UGC- -5'
24621 3' -51 NC_005264.1 + 7935 0.67 0.980304
Target:  5'- ---cGUCCacgcGUCGUcCACGGCCGCGg -3'
miRNA:   3'- uuauUAGGga--CAGUAcGUGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 24507 0.68 0.959299
Target:  5'- --gGcgCCUUGUCGcGCACGcGCCAUGa -3'
miRNA:   3'- uuaUuaGGGACAGUaCGUGU-CGGUGC- -5'
24621 3' -51 NC_005264.1 + 3206 0.66 0.98789
Target:  5'- ---cGUUCCUGUCuucGCGUAGCCACc -3'
miRNA:   3'- uuauUAGGGACAGua-CGUGUCGGUGc -5'
24621 3' -51 NC_005264.1 + 158181 0.68 0.962624
Target:  5'- aGGUAuUCCCUGaUCGUGCucguguccgagaaGCGGCC-CGg -3'
miRNA:   3'- -UUAUuAGGGAC-AGUACG-------------UGUCGGuGC- -5'
24621 3' -51 NC_005264.1 + 41999 0.68 0.966425
Target:  5'- -----aCCUUGUCuucGUGCucguCGGCCACGg -3'
miRNA:   3'- uuauuaGGGACAG---UACGu---GUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 77415 0.66 0.989375
Target:  5'- ----cUCCCUGUCc-GCGCGGUCgGCGu -3'
miRNA:   3'- uuauuAGGGACAGuaCGUGUCGG-UGC- -5'
24621 3' -51 NC_005264.1 + 22804 0.66 0.989927
Target:  5'- -----cCCCUGUCAgagggaccguugugGUACAGCCucaGCGa -3'
miRNA:   3'- uuauuaGGGACAGUa-------------CGUGUCGG---UGC- -5'
24621 3' -51 NC_005264.1 + 7844 0.68 0.962982
Target:  5'- ---cGUUCCUGUUgagGUACAGCUGCGa -3'
miRNA:   3'- uuauUAGGGACAGua-CGUGUCGGUGC- -5'
24621 3' -51 NC_005264.1 + 153830 0.68 0.964388
Target:  5'- ---cAUCCgUGUCAUGCGCgucgagugguaggacGGgCCACGa -3'
miRNA:   3'- uuauUAGGgACAGUACGUG---------------UC-GGUGC- -5'
24621 3' -51 NC_005264.1 + 113472 0.69 0.94208
Target:  5'- -----cCCCgcgGUCGUGcCACGGUCGCGc -3'
miRNA:   3'- uuauuaGGGa--CAGUAC-GUGUCGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.