miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 3' -57.1 NC_005264.1 + 35441 0.66 0.868775
Target:  5'- ---cGCGCCGCguccGGCGCCG-GUAagcauCAGCg -3'
miRNA:   3'- aacuCGUGGCG----UCGUGGCgCAU-----GUCG- -5'
24622 3' -57.1 NC_005264.1 + 77200 0.66 0.868775
Target:  5'- -cGGGcCAUCGCGGC-CauuaGCGgcUGCAGCa -3'
miRNA:   3'- aaCUC-GUGGCGUCGuGg---CGC--AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 2431 0.66 0.868775
Target:  5'- cUGGGCGCacaGCAGC-CUGCacucuuccuUGCGGCa -3'
miRNA:   3'- aACUCGUGg--CGUCGuGGCGc--------AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 154468 0.66 0.868775
Target:  5'- ---cGCGCCGCguccGGCGCCG-GUAagcauCAGCg -3'
miRNA:   3'- aacuCGUGGCG----UCGUGGCgCAU-----GUCG- -5'
24622 3' -57.1 NC_005264.1 + 4496 0.66 0.868775
Target:  5'- -gGGGCGCggUGCGGCcgcuuguguuCCGCGUGcCAGUa -3'
miRNA:   3'- aaCUCGUG--GCGUCGu---------GGCGCAU-GUCG- -5'
24622 3' -57.1 NC_005264.1 + 147240 0.66 0.868775
Target:  5'- -aGAGauaugccggaGCCGCAGCugCGCccGCAaGCu -3'
miRNA:   3'- aaCUCg---------UGGCGUCGugGCGcaUGU-CG- -5'
24622 3' -57.1 NC_005264.1 + 55176 0.66 0.86803
Target:  5'- cUGGGCGCgGCugaaggcGGCgACCGCGaaacguCGGCg -3'
miRNA:   3'- aACUCGUGgCG-------UCG-UGGCGCau----GUCG- -5'
24622 3' -57.1 NC_005264.1 + 18529 0.66 0.864273
Target:  5'- -gGGGCGCCGUcucccccugagggcGCGCCGgCGUcagucggaGCGGCa -3'
miRNA:   3'- aaCUCGUGGCGu-------------CGUGGC-GCA--------UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 2855 0.66 0.861229
Target:  5'- ---cGCGCCGUcGC-CCGC-UGCGGCu -3'
miRNA:   3'- aacuCGUGGCGuCGuGGCGcAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 101689 0.66 0.861229
Target:  5'- -cGAacGCaACCGCAGCGa-GCGU-CAGCu -3'
miRNA:   3'- aaCU--CG-UGGCGUCGUggCGCAuGUCG- -5'
24622 3' -57.1 NC_005264.1 + 121881 0.66 0.861229
Target:  5'- ---cGCGCCGUcGC-CCGC-UGCGGCu -3'
miRNA:   3'- aacuCGUGGCGuCGuGGCGcAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 132719 0.66 0.861229
Target:  5'- ---uGCGCCGCAGCucgguCCGCGccGCccGCa -3'
miRNA:   3'- aacuCGUGGCGUCGu----GGCGCa-UGu-CG- -5'
24622 3' -57.1 NC_005264.1 + 59232 0.66 0.861229
Target:  5'- -cGAGCAaauUCGCGGgaAUCGCGguaGCGGCu -3'
miRNA:   3'- aaCUCGU---GGCGUCg-UGGCGCa--UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 86413 0.66 0.860462
Target:  5'- -aGAGCucucuagggACCGUGGCGCacccaauCGCGcACGGCa -3'
miRNA:   3'- aaCUCG---------UGGCGUCGUG-------GCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 59252 0.66 0.853474
Target:  5'- -gGGGCcacGCCGUGGCcgauccgaucuCCGCGUugAGUa -3'
miRNA:   3'- aaCUCG---UGGCGUCGu----------GGCGCAugUCG- -5'
24622 3' -57.1 NC_005264.1 + 38445 0.66 0.853474
Target:  5'- -cGAGCGCCGguGUgaaucauCCGCGa--GGCc -3'
miRNA:   3'- aaCUCGUGGCguCGu------GGCGCaugUCG- -5'
24622 3' -57.1 NC_005264.1 + 40316 0.66 0.853474
Target:  5'- -cGAGgAucccCUGCccccCGCCGCGUGCGGCg -3'
miRNA:   3'- aaCUCgU----GGCGuc--GUGGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 137872 0.66 0.853474
Target:  5'- -aGAGUuuccgauucGgCGCAGCGCCcugGUACGGCa -3'
miRNA:   3'- aaCUCG---------UgGCGUCGUGGcg-CAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 157472 0.66 0.853474
Target:  5'- -cGAGCGCCGguGUgaaucauCCGCGa--GGCc -3'
miRNA:   3'- aaCUCGUGGCguCGu------GGCGCaugUCG- -5'
24622 3' -57.1 NC_005264.1 + 75707 0.66 0.853474
Target:  5'- --cAGUACCGCGaCGaucuCgGCGUACAGCg -3'
miRNA:   3'- aacUCGUGGCGUcGU----GgCGCAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.