miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 3' -57.1 NC_005264.1 + 154468 0.66 0.868775
Target:  5'- ---cGCGCCGCguccGGCGCCG-GUAagcauCAGCg -3'
miRNA:   3'- aacuCGUGGCG----UCGUGGCgCAU-----GUCG- -5'
24622 3' -57.1 NC_005264.1 + 41071 0.66 0.848724
Target:  5'- -gGAcGCGCCGUuaaaccuagaagacgGGCccgGCCGCGgGCGGCc -3'
miRNA:   3'- aaCU-CGUGGCG---------------UCG---UGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 113402 0.66 0.845518
Target:  5'- -cGAGCugCGCgacggcagagAGCuCCaUGUGCGGCa -3'
miRNA:   3'- aaCUCGugGCG----------UCGuGGcGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 94406 0.66 0.845518
Target:  5'- aUGAuCagGCCGCGGCGCCgguaguccagaGCGaGCAGCc -3'
miRNA:   3'- aACUcG--UGGCGUCGUGG-----------CGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 49800 0.66 0.845518
Target:  5'- -aGAuCGCCGCGGCccagucgcgGCCGCGgaaaAGCu -3'
miRNA:   3'- aaCUcGUGGCGUCG---------UGGCGCaug-UCG- -5'
24622 3' -57.1 NC_005264.1 + 43721 0.66 0.845518
Target:  5'- -cGAGCGgcCCGCGuGCGCCGauaaGUGCgaGGUg -3'
miRNA:   3'- aaCUCGU--GGCGU-CGUGGCg---CAUG--UCG- -5'
24622 3' -57.1 NC_005264.1 + 7065 0.66 0.845518
Target:  5'- --cGGCGCCGgcCGGCGCCGuCGcGCuGCg -3'
miRNA:   3'- aacUCGUGGC--GUCGUGGC-GCaUGuCG- -5'
24622 3' -57.1 NC_005264.1 + 95339 0.66 0.845518
Target:  5'- -cGGGCGCCGCGaaacGgACUcgGCGggGCGGCg -3'
miRNA:   3'- aaCUCGUGGCGU----CgUGG--CGCa-UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 91299 0.66 0.845518
Target:  5'- -cGAGCuCCGcCAGCAg-GCGgUACAGCu -3'
miRNA:   3'- aaCUCGuGGC-GUCGUggCGC-AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 44775 0.66 0.852687
Target:  5'- -gGuGC-CCGCGGCgaucguugccgacGCCGCGgucgccGCGGCa -3'
miRNA:   3'- aaCuCGuGGCGUCG-------------UGGCGCa-----UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 25603 0.66 0.853474
Target:  5'- --uAGCGCCGggcCGGCGuuGCGgaacACGGCg -3'
miRNA:   3'- aacUCGUGGC---GUCGUggCGCa---UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 59252 0.66 0.853474
Target:  5'- -gGGGCcacGCCGUGGCcgauccgaucuCCGCGUugAGUa -3'
miRNA:   3'- aaCUCG---UGGCGUCGu----------GGCGCAugUCG- -5'
24622 3' -57.1 NC_005264.1 + 77200 0.66 0.868775
Target:  5'- -cGGGcCAUCGCGGC-CauuaGCGgcUGCAGCa -3'
miRNA:   3'- aaCUC-GUGGCGUCGuGg---CGC--AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 132719 0.66 0.861229
Target:  5'- ---uGCGCCGCAGCucgguCCGCGccGCccGCa -3'
miRNA:   3'- aacuCGUGGCGUCGu----GGCGCa-UGu-CG- -5'
24622 3' -57.1 NC_005264.1 + 2855 0.66 0.861229
Target:  5'- ---cGCGCCGUcGC-CCGC-UGCGGCu -3'
miRNA:   3'- aacuCGUGGCGuCGuGGCGcAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 75707 0.66 0.853474
Target:  5'- --cAGUACCGCGaCGaucuCgGCGUACAGCg -3'
miRNA:   3'- aacUCGUGGCGUcGU----GgCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 40316 0.66 0.853474
Target:  5'- -cGAGgAucccCUGCccccCGCCGCGUGCGGCg -3'
miRNA:   3'- aaCUCgU----GGCGuc--GUGGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 38445 0.66 0.853474
Target:  5'- -cGAGCGCCGguGUgaaucauCCGCGa--GGCc -3'
miRNA:   3'- aaCUCGUGGCguCGu------GGCGCaugUCG- -5'
24622 3' -57.1 NC_005264.1 + 21896 0.66 0.853474
Target:  5'- -aGGGUAUU-CGGCGgCGCGUGCGGUc -3'
miRNA:   3'- aaCUCGUGGcGUCGUgGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 75495 0.66 0.853474
Target:  5'- gUUGAGacUACCGgGGCACgcucgccgagcgUGCGUAUAGUg -3'
miRNA:   3'- -AACUC--GUGGCgUCGUG------------GCGCAUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.