miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 3' -57.1 NC_005264.1 + 74668 1.1 0.001786
Target:  5'- uUUGAGCACCGCAGCACCGCGUACAGCg -3'
miRNA:   3'- -AACUCGUGGCGUCGUGGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 5555 0.81 0.15177
Target:  5'- cUGAcGuCACCGaCAGCACCGCGgACAGCg -3'
miRNA:   3'- aACU-C-GUGGC-GUCGUGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 124582 0.81 0.15177
Target:  5'- cUGAcGuCACCGaCAGCACCGCGgACAGCg -3'
miRNA:   3'- aACU-C-GUGGC-GUCGUGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 138542 0.81 0.15975
Target:  5'- --cGGCACCGUGGauguaACCGCGUGCGGCg -3'
miRNA:   3'- aacUCGUGGCGUCg----UGGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 46886 0.81 0.168107
Target:  5'- -cGGGCGCCGCGuaccuccuagcuGCGCCGCGUguucGCGGCu -3'
miRNA:   3'- aaCUCGUGGCGU------------CGUGGCGCA----UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 22895 0.79 0.210714
Target:  5'- -cGGGCACgauaGCAGCACCGCGU-CGGUc -3'
miRNA:   3'- aaCUCGUGg---CGUCGUGGCGCAuGUCG- -5'
24622 3' -57.1 NC_005264.1 + 6522 0.79 0.221366
Target:  5'- -aGcAGCGCguuUGCAGCGCCGCGUACGGg -3'
miRNA:   3'- aaC-UCGUG---GCGUCGUGGCGCAUGUCg -5'
24622 3' -57.1 NC_005264.1 + 112258 0.78 0.250012
Target:  5'- -cGGGCugCuCAGCGCCGCGUGC-GCu -3'
miRNA:   3'- aaCUCGugGcGUCGUGGCGCAUGuCG- -5'
24622 3' -57.1 NC_005264.1 + 67075 0.78 0.256096
Target:  5'- -cGAGUACuCGCA-CGCCGCGUACAGa -3'
miRNA:   3'- aaCUCGUG-GCGUcGUGGCGCAUGUCg -5'
24622 3' -57.1 NC_005264.1 + 30117 0.77 0.262301
Target:  5'- -cGGGCGgCGCGGCACCGagcUGCGGCg -3'
miRNA:   3'- aaCUCGUgGCGUCGUGGCgc-AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 35481 0.77 0.275077
Target:  5'- -aGAGUGCCGCGGCcgAUCGCG-ACGGCu -3'
miRNA:   3'- aaCUCGUGGCGUCG--UGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 97520 0.76 0.309183
Target:  5'- -gGAGCuGCCGCGGCugUGgCGUgGCAGCg -3'
miRNA:   3'- aaCUCG-UGGCGUCGugGC-GCA-UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 70121 0.76 0.309183
Target:  5'- -cGAGCuGCCGC-GUAcucCCGCGUGCGGCa -3'
miRNA:   3'- aaCUCG-UGGCGuCGU---GGCGCAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 59704 0.76 0.316379
Target:  5'- ---uGCGCCGC-GCGCCGCGccgGCGGCu -3'
miRNA:   3'- aacuCGUGGCGuCGUGGCGCa--UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 111742 0.76 0.338722
Target:  5'- -cGAGCagACCGCAGCACCgGCG-ACcGCg -3'
miRNA:   3'- aaCUCG--UGGCGUCGUGG-CGCaUGuCG- -5'
24622 3' -57.1 NC_005264.1 + 109556 0.75 0.354242
Target:  5'- cUG-GCaaccaaACUGCGGCGCCGCGggACAGCa -3'
miRNA:   3'- aACuCG------UGGCGUCGUGGCGCa-UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 40054 0.75 0.362188
Target:  5'- -aGGGC-CCGCAGCGCCcCG-GCGGCa -3'
miRNA:   3'- aaCUCGuGGCGUCGUGGcGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 159081 0.75 0.362188
Target:  5'- -aGGGC-CCGCAGCGCCcCG-GCGGCa -3'
miRNA:   3'- aaCUCGuGGCGUCGUGGcGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 87753 0.74 0.386761
Target:  5'- -cGGcGCcuGCCGCAGCGCCGCGaagaacCAGCg -3'
miRNA:   3'- aaCU-CG--UGGCGUCGUGGCGCau----GUCG- -5'
24622 3' -57.1 NC_005264.1 + 46281 0.74 0.386761
Target:  5'- cUGAGCGCCGCAGC-UCGCucaucCGGCg -3'
miRNA:   3'- aACUCGUGGCGUCGuGGCGcau--GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.