miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 3' -57.1 NC_005264.1 + 1533 0.71 0.574583
Target:  5'- -gGGGCcCCGCGGCguugACCGCGc-CGGCa -3'
miRNA:   3'- aaCUCGuGGCGUCG----UGGCGCauGUCG- -5'
24622 3' -57.1 NC_005264.1 + 2431 0.66 0.868775
Target:  5'- cUGGGCGCacaGCAGC-CUGCacucuuccuUGCGGCa -3'
miRNA:   3'- aACUCGUGg--CGUCGuGGCGc--------AUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 2855 0.66 0.861229
Target:  5'- ---cGCGCCGUcGC-CCGC-UGCGGCu -3'
miRNA:   3'- aacuCGUGGCGuCGuGGCGcAUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 2995 0.67 0.811815
Target:  5'- -cGAGCGCCGaCuGgGCCGgCGgcuCGGCu -3'
miRNA:   3'- aaCUCGUGGC-GuCgUGGC-GCau-GUCG- -5'
24622 3' -57.1 NC_005264.1 + 3036 0.67 0.809175
Target:  5'- uUUGcAGCGCCGCugcgucuccuaacuGGCacgcugucucGCCGCGacugGCGGCg -3'
miRNA:   3'- -AAC-UCGUGGCG--------------UCG----------UGGCGCa---UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 4496 0.66 0.868775
Target:  5'- -gGGGCGCggUGCGGCcgcuuguguuCCGCGUGcCAGUa -3'
miRNA:   3'- aaCUCGUG--GCGUCGu---------GGCGCAU-GUCG- -5'
24622 3' -57.1 NC_005264.1 + 4593 0.69 0.676947
Target:  5'- --aGGCccuccCCGcCAGCGCCGCG-GCGGCg -3'
miRNA:   3'- aacUCGu----GGC-GUCGUGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 4689 0.73 0.485617
Target:  5'- -gGGGCGa-GUGGCGCCGCGUccacgACAGCa -3'
miRNA:   3'- aaCUCGUggCGUCGUGGCGCA-----UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 4966 0.71 0.564453
Target:  5'- aUGAGCgcgaACCGUaaaacacagaAGUGCCGCGaagACAGCg -3'
miRNA:   3'- aACUCG----UGGCG----------UCGUGGCGCa--UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 5257 0.7 0.615443
Target:  5'- -aGAGCGCCGggaGGCGagUCGCGgccggACGGCg -3'
miRNA:   3'- aaCUCGUGGCg--UCGU--GGCGCa----UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 5555 0.81 0.15177
Target:  5'- cUGAcGuCACCGaCAGCACCGCGgACAGCg -3'
miRNA:   3'- aACU-C-GUGGC-GUCGUGGCGCaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 6142 0.71 0.594958
Target:  5'- -cGAGgGCCGCGcgcccgucgcGCAUCGCGUGCAc- -3'
miRNA:   3'- aaCUCgUGGCGU----------CGUGGCGCAUGUcg -5'
24622 3' -57.1 NC_005264.1 + 6329 0.67 0.784787
Target:  5'- -cGAGCccCCGUAGCugUGCGaUAC-GCg -3'
miRNA:   3'- aaCUCGu-GGCGUCGugGCGC-AUGuCG- -5'
24622 3' -57.1 NC_005264.1 + 6522 0.79 0.221366
Target:  5'- -aGcAGCGCguuUGCAGCGCCGCGUACGGg -3'
miRNA:   3'- aaC-UCGUG---GCGUCGUGGCGCAUGUCg -5'
24622 3' -57.1 NC_005264.1 + 7065 0.66 0.845518
Target:  5'- --cGGCGCCGgcCGGCGCCGuCGcGCuGCg -3'
miRNA:   3'- aacUCGUGGC--GUCGUGGC-GCaUGuCG- -5'
24622 3' -57.1 NC_005264.1 + 8299 0.69 0.717319
Target:  5'- gUGGGCgACgGgGGCACCuGCGccGCGGCg -3'
miRNA:   3'- aACUCG-UGgCgUCGUGG-CGCa-UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 15875 0.69 0.707313
Target:  5'- --aGGCuCCGCAGC-CUGCGgccuCAGCg -3'
miRNA:   3'- aacUCGuGGCGUCGuGGCGCau--GUCG- -5'
24622 3' -57.1 NC_005264.1 + 16559 0.68 0.766064
Target:  5'- --cAGCGCgguggGCGGCGCCGgGgcgGCGGCg -3'
miRNA:   3'- aacUCGUGg----CGUCGUGGCgCa--UGUCG- -5'
24622 3' -57.1 NC_005264.1 + 17091 0.66 0.853474
Target:  5'- aUGcGCACCGCcGCAaacaaaccCCGCa-GCAGCa -3'
miRNA:   3'- aACuCGUGGCGuCGU--------GGCGcaUGUCG- -5'
24622 3' -57.1 NC_005264.1 + 17731 0.66 0.837366
Target:  5'- cUGcGCGCCGCGGCgcaaccuauGCCaaGUucGCGGCa -3'
miRNA:   3'- aACuCGUGGCGUCG---------UGGcgCA--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.