Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24622 | 5' | -57.9 | NC_005264.1 | + | 20130 | 0.66 | 0.866073 |
Target: 5'- uCGACGAUgcgGgcaGGCGaUGGCGCGCc -3' miRNA: 3'- -GUUGCUGaa-CaucCCGC-GCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 129497 | 0.66 | 0.866073 |
Target: 5'- gCGGCGGCgc--AGGGUuugGCGGCGC-CGg -3' miRNA: 3'- -GUUGCUGaacaUCCCG---CGCCGCGcGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 146403 | 0.66 | 0.86163 |
Target: 5'- aCGAUGACcucGUAGGGCG-GGUGCugauggcucgaugccGCGg -3' miRNA: 3'- -GUUGCUGaa-CAUCCCGCgCCGCG---------------CGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 19425 | 0.66 | 0.858629 |
Target: 5'- aGGCGcCggGUGuGGcCGCGGgGCGCGg -3' miRNA: 3'- gUUGCuGaaCAUcCC-GCGCCgCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 122644 | 0.66 | 0.850988 |
Target: 5'- gGGgGGCcgcgAGGGCG-GGCGCGCu -3' miRNA: 3'- gUUgCUGaacaUCCCGCgCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 142808 | 0.66 | 0.850988 |
Target: 5'- uGACG-CUgcacGGGUGCGaGCGCGCc -3' miRNA: 3'- gUUGCuGAacauCCCGCGC-CGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 3617 | 0.66 | 0.850988 |
Target: 5'- gGGgGGCcgcgAGGGCG-GGCGCGCu -3' miRNA: 3'- gUUgCUGaacaUCCCGCgCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 13175 | 0.66 | 0.847878 |
Target: 5'- aCGACGACgaccuacGCGCuGCGCGCGg -3' miRNA: 3'- -GUUGCUGaacauccCGCGcCGCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 132202 | 0.66 | 0.847878 |
Target: 5'- aCGACGACgaccuacGCGCuGCGCGCGg -3' miRNA: 3'- -GUUGCUGaacauccCGCGcCGCGCGC- -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 127328 | 0.66 | 0.843156 |
Target: 5'- gGGCGACg---GGGGCaccugcgccGCGGCGuCGCc -3' miRNA: 3'- gUUGCUGaacaUCCCG---------CGCCGC-GCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 131456 | 0.66 | 0.843156 |
Target: 5'- -uACGuGCUUGga-GGCGCGGUGCGg- -3' miRNA: 3'- guUGC-UGAACaucCCGCGCCGCGCgc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 43783 | 0.66 | 0.843156 |
Target: 5'- ---aGACUcgccGU-GGGUGCGGgGCGCa -3' miRNA: 3'- guugCUGAa---CAuCCCGCGCCgCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 12429 | 0.66 | 0.843156 |
Target: 5'- -uACGuGCUUGga-GGCGCGGUGCGg- -3' miRNA: 3'- guUGC-UGAACaucCCGCGCCGCGCgc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 8301 | 0.66 | 0.843156 |
Target: 5'- gGGCGACg---GGGGCaccugcgccGCGGCGuCGCc -3' miRNA: 3'- gUUGCUGaacaUCCCG---------CGCCGC-GCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 162809 | 0.66 | 0.843156 |
Target: 5'- ---aGACUcgccGU-GGGUGCGGgGCGCa -3' miRNA: 3'- guugCUGAa---CAuCCCGCGCCgCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 94522 | 0.66 | 0.83514 |
Target: 5'- --uCGGCcacgUGggAGGGCaGCGGCGcCGCa -3' miRNA: 3'- guuGCUGa---ACa-UCCCG-CGCCGC-GCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 3669 | 0.67 | 0.826947 |
Target: 5'- gGGCGACUggcauugGUgcGGGGCcUGGCGCGg- -3' miRNA: 3'- gUUGCUGAa------CA--UCCCGcGCCGCGCgc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 107889 | 0.67 | 0.826947 |
Target: 5'- -cAUGGCagcUAGcGGCGCGGUGCGUa -3' miRNA: 3'- guUGCUGaacAUC-CCGCGCCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 18398 | 0.67 | 0.818583 |
Target: 5'- aCAACGACcaccGUuccggccGGCGCaGGCGCGCc -3' miRNA: 3'- -GUUGCUGaa--CAuc-----CCGCG-CCGCGCGc -5' |
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24622 | 5' | -57.9 | NC_005264.1 | + | 1204 | 0.67 | 0.818583 |
Target: 5'- aGAgGugUUGUAauGGGcCGUGGgGCGUGc -3' miRNA: 3'- gUUgCugAACAU--CCC-GCGCCgCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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