miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 5' -57.9 NC_005264.1 + 74705 1.08 0.002382
Target:  5'- uCAACGACUUGUAGGGCGCGGCGCGCGa -3'
miRNA:   3'- -GUUGCUGAACAUCCCGCGCCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 103126 0.79 0.223497
Target:  5'- --cCGGCgcgGUAGccgccGGCGCGGCGCGCGg -3'
miRNA:   3'- guuGCUGaa-CAUC-----CCGCGCCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 121896 0.77 0.301378
Target:  5'- -uGCGGCUgcgaucgaccGGGGCGCGGCGCgGCGg -3'
miRNA:   3'- guUGCUGAaca-------UCCCGCGCCGCG-CGC- -5'
24622 5' -57.9 NC_005264.1 + 2870 0.77 0.301378
Target:  5'- -uGCGGCUgcgaucgaccGGGGCGCGGCGCgGCGg -3'
miRNA:   3'- guUGCUGAaca-------UCCCGCGCCGCG-CGC- -5'
24622 5' -57.9 NC_005264.1 + 66488 0.77 0.302747
Target:  5'- uCAAUG-CUUGgcGGGCugcGCGGCGCGCu -3'
miRNA:   3'- -GUUGCuGAACauCCCG---CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 52201 0.76 0.309665
Target:  5'- uGAgGGCc-GUGGGGCGCGGUGgCGCGa -3'
miRNA:   3'- gUUgCUGaaCAUCCCGCGCCGC-GCGC- -5'
24622 5' -57.9 NC_005264.1 + 115726 0.73 0.490982
Target:  5'- --cCGGCaUGguagGGGGCGCGGCGaGCGc -3'
miRNA:   3'- guuGCUGaACa---UCCCGCGCCGCgCGC- -5'
24622 5' -57.9 NC_005264.1 + 9923 0.72 0.500398
Target:  5'- -cGCGACUgc--GGGCuuuGCGGCGCGCu -3'
miRNA:   3'- guUGCUGAacauCCCG---CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 124320 0.72 0.509893
Target:  5'- gCGGCGGCUgacccGUGGGGCG-GGCGacugGCGg -3'
miRNA:   3'- -GUUGCUGAa----CAUCCCGCgCCGCg---CGC- -5'
24622 5' -57.9 NC_005264.1 + 5293 0.72 0.509893
Target:  5'- gCGGCGGCUgacccGUGGGGCG-GGCGacugGCGg -3'
miRNA:   3'- -GUUGCUGAa----CAUCCCGCgCCGCg---CGC- -5'
24622 5' -57.9 NC_005264.1 + 131587 0.72 0.509893
Target:  5'- uGGCGcCUaggUGUggAGGGaGCGGCGCGCGu -3'
miRNA:   3'- gUUGCuGA---ACA--UCCCgCGCCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 132757 0.72 0.529102
Target:  5'- -cGCGAUUcUGUccGGGCGCGGCgGCGCc -3'
miRNA:   3'- guUGCUGA-ACAu-CCCGCGCCG-CGCGc -5'
24622 5' -57.9 NC_005264.1 + 25347 0.71 0.55839
Target:  5'- gGACGAgUUG-GGGGUaGCGGUGCGUa -3'
miRNA:   3'- gUUGCUgAACaUCCCG-CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 95749 0.71 0.597098
Target:  5'- aGACGGCcaugGGGGaucuguaCGCGGCGUGCGa -3'
miRNA:   3'- gUUGCUGaacaUCCC-------GCGCCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 106599 0.71 0.598097
Target:  5'- gCAugGGCUU-UGGGGuCGCGGCGUacGUGa -3'
miRNA:   3'- -GUugCUGAAcAUCCC-GCGCCGCG--CGC- -5'
24622 5' -57.9 NC_005264.1 + 154791 0.7 0.638185
Target:  5'- -cGCGACguggGUgaagaggcggAGGGCGCGGUgGCGCc -3'
miRNA:   3'- guUGCUGaa--CA----------UCCCGCGCCG-CGCGc -5'
24622 5' -57.9 NC_005264.1 + 35765 0.7 0.638185
Target:  5'- -cGCGACguggGUgaagaggcggAGGGCGCGGUgGCGCc -3'
miRNA:   3'- guUGCUGaa--CA----------UCCCGCGCCG-CGCGc -5'
24622 5' -57.9 NC_005264.1 + 35969 0.7 0.638185
Target:  5'- uGGCGAUUcgccUGgagGGGGCGCGGagagcgaaaCGCGCa -3'
miRNA:   3'- gUUGCUGA----ACa--UCCCGCGCC---------GCGCGc -5'
24622 5' -57.9 NC_005264.1 + 22764 0.7 0.648214
Target:  5'- aUAGCGGCgggcaaUGaGGGGCGCGGCGacacuGCu -3'
miRNA:   3'- -GUUGCUGa-----ACaUCCCGCGCCGCg----CGc -5'
24622 5' -57.9 NC_005264.1 + 96888 0.7 0.658231
Target:  5'- aGAUGGCaUGgcGGcGCGCGaGgGCGCGg -3'
miRNA:   3'- gUUGCUGaACauCC-CGCGC-CgCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.