miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 5' -57.9 NC_005264.1 + 18398 0.67 0.818583
Target:  5'- aCAACGACcaccGUuccggccGGCGCaGGCGCGCc -3'
miRNA:   3'- -GUUGCUGaa--CAuc-----CCGCG-CCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 157692 0.67 0.801375
Target:  5'- gGACGAUgc----GGCGCGGCcGCGCa -3'
miRNA:   3'- gUUGCUGaacaucCCGCGCCG-CGCGc -5'
24622 5' -57.9 NC_005264.1 + 83188 0.67 0.801375
Target:  5'- uCAGCGGCa-----GGCGCGGCGCGa- -3'
miRNA:   3'- -GUUGCUGaacaucCCGCGCCGCGCgc -5'
24622 5' -57.9 NC_005264.1 + 21983 0.67 0.801375
Target:  5'- gCAGuCGGCcUGgcGcaagcgaaaGGCGCGGCGCGUa -3'
miRNA:   3'- -GUU-GCUGaACauC---------CCGCGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 125265 0.67 0.796095
Target:  5'- -cGCGACUUGUucuucgcccuccGCgGCGGCGCGCu -3'
miRNA:   3'- guUGCUGAACAucc---------CG-CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 86861 0.67 0.796095
Target:  5'- cUAGCGGCgUGUGGGGCaaugcuuuccucacaGgCGGCGgcCGCGa -3'
miRNA:   3'- -GUUGCUGaACAUCCCG---------------C-GCCGC--GCGC- -5'
24622 5' -57.9 NC_005264.1 + 128071 0.67 0.791655
Target:  5'- gAGCGGCUcaucuucgUGUAGcgacagcGGCGacCGGCGCGCc -3'
miRNA:   3'- gUUGCUGA--------ACAUC-------CCGC--GCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 117500 0.67 0.783578
Target:  5'- --uCGcCUcGUcucGGGCGCGGCGCGUc -3'
miRNA:   3'- guuGCuGAaCAu--CCCGCGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 4480 0.67 0.783578
Target:  5'- aAGCGGaaaccGUcaaGGGGCGCGGUGCGg- -3'
miRNA:   3'- gUUGCUgaa--CA---UCCCGCGCCGCGCgc -5'
24622 5' -57.9 NC_005264.1 + 91906 0.67 0.783578
Target:  5'- gCAGCGAUg-GgcGGGCGCGGCGa--- -3'
miRNA:   3'- -GUUGCUGaaCauCCCGCGCCGCgcgc -5'
24622 5' -57.9 NC_005264.1 + 16568 0.68 0.77448
Target:  5'- gGGCGGCgcc-GGGGCgGCGGCGCa-- -3'
miRNA:   3'- gUUGCUGaacaUCCCG-CGCCGCGcgc -5'
24622 5' -57.9 NC_005264.1 + 94611 0.68 0.765259
Target:  5'- -cAUGGCUUGgcgguGcGGCGUGGaCGCGCu -3'
miRNA:   3'- guUGCUGAACau---C-CCGCGCC-GCGCGc -5'
24622 5' -57.9 NC_005264.1 + 145099 0.68 0.765259
Target:  5'- -cGCGaACUUGgcaUAGGuugcgcCGCGGCGCGCa -3'
miRNA:   3'- guUGC-UGAAC---AUCCc-----GCGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 128883 0.68 0.755925
Target:  5'- aAGCGGCcccuaucGGGCGCGGUcccgGCGCGc -3'
miRNA:   3'- gUUGCUGaacau--CCCGCGCCG----CGCGC- -5'
24622 5' -57.9 NC_005264.1 + 151862 0.68 0.755925
Target:  5'- gCGGCGACacGUGGGGgGCGucuucGCGgGCa -3'
miRNA:   3'- -GUUGCUGaaCAUCCCgCGC-----CGCgCGc -5'
24622 5' -57.9 NC_005264.1 + 9857 0.68 0.755925
Target:  5'- aAGCGGCcccuaucGGGCGCGGUcccgGCGCGc -3'
miRNA:   3'- gUUGCUGaacau--CCCGCGCCG----CGCGC- -5'
24622 5' -57.9 NC_005264.1 + 45739 0.68 0.755925
Target:  5'- uCGACGGCUccgaaaacUGccaUAGGaccccugcGCGgGGCGCGCGg -3'
miRNA:   3'- -GUUGCUGA--------AC---AUCC--------CGCgCCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 157194 0.68 0.746485
Target:  5'- -uGCGACUaccgccgcgcUGUGGGGacaccuaGCGuCGCGCGg -3'
miRNA:   3'- guUGCUGA----------ACAUCCCg------CGCcGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 34253 0.68 0.746485
Target:  5'- --cCGGCUucUGUAGcgaGGCGCgGGCGaCGCGu -3'
miRNA:   3'- guuGCUGA--ACAUC---CCGCG-CCGC-GCGC- -5'
24622 5' -57.9 NC_005264.1 + 153280 0.68 0.746485
Target:  5'- --cCGGCUucUGUAGcgaGGCGCgGGCGaCGCGu -3'
miRNA:   3'- guuGCUGA--ACAUC---CCGCG-CCGC-GCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.