miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24622 5' -57.9 NC_005264.1 + 1204 0.67 0.818583
Target:  5'- aGAgGugUUGUAauGGGcCGUGGgGCGUGc -3'
miRNA:   3'- gUUgCugAACAU--CCC-GCGCCgCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 2826 0.69 0.698016
Target:  5'- aAACGGgUUGgcggAGGGC-CGGuCGCGCu -3'
miRNA:   3'- gUUGCUgAACa---UCCCGcGCC-GCGCGc -5'
24622 5' -57.9 NC_005264.1 + 2870 0.77 0.301378
Target:  5'- -uGCGGCUgcgaucgaccGGGGCGCGGCGCgGCGg -3'
miRNA:   3'- guUGCUGAaca-------UCCCGCGCCGCG-CGC- -5'
24622 5' -57.9 NC_005264.1 + 3617 0.66 0.850988
Target:  5'- gGGgGGCcgcgAGGGCG-GGCGCGCu -3'
miRNA:   3'- gUUgCUGaacaUCCCGCgCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 3669 0.67 0.826947
Target:  5'- gGGCGACUggcauugGUgcGGGGCcUGGCGCGg- -3'
miRNA:   3'- gUUGCUGAa------CA--UCCCGcGCCGCGCgc -5'
24622 5' -57.9 NC_005264.1 + 4480 0.67 0.783578
Target:  5'- aAGCGGaaaccGUcaaGGGGCGCGGUGCGg- -3'
miRNA:   3'- gUUGCUgaa--CA---UCCCGCGCCGCGCgc -5'
24622 5' -57.9 NC_005264.1 + 5293 0.72 0.509893
Target:  5'- gCGGCGGCUgacccGUGGGGCG-GGCGacugGCGg -3'
miRNA:   3'- -GUUGCUGAa----CAUCCCGCgCCGCg---CGC- -5'
24622 5' -57.9 NC_005264.1 + 8301 0.66 0.843156
Target:  5'- gGGCGACg---GGGGCaccugcgccGCGGCGuCGCc -3'
miRNA:   3'- gUUGCUGaacaUCCCG---------CGCCGC-GCGc -5'
24622 5' -57.9 NC_005264.1 + 9857 0.68 0.755925
Target:  5'- aAGCGGCcccuaucGGGCGCGGUcccgGCGCGc -3'
miRNA:   3'- gUUGCUGaacau--CCCGCGCCG----CGCGC- -5'
24622 5' -57.9 NC_005264.1 + 9923 0.72 0.500398
Target:  5'- -cGCGACUgc--GGGCuuuGCGGCGCGCu -3'
miRNA:   3'- guUGCUGAacauCCCG---CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 10535 0.69 0.68416
Target:  5'- -uGCGGCgccgcccucaGGGGCGCGGauCGCGCGu -3'
miRNA:   3'- guUGCUGaaca------UCCCGCGCC--GCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 12429 0.66 0.843156
Target:  5'- -uACGuGCUUGga-GGCGCGGUGCGg- -3'
miRNA:   3'- guUGC-UGAACaucCCGCGCCGCGCgc -5'
24622 5' -57.9 NC_005264.1 + 13175 0.66 0.847878
Target:  5'- aCGACGACgaccuacGCGCuGCGCGCGg -3'
miRNA:   3'- -GUUGCUGaacauccCGCGcCGCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 16568 0.68 0.77448
Target:  5'- gGGCGGCgcc-GGGGCgGCGGCGCa-- -3'
miRNA:   3'- gUUGCUGaacaUCCCG-CGCCGCGcgc -5'
24622 5' -57.9 NC_005264.1 + 18398 0.67 0.818583
Target:  5'- aCAACGACcaccGUuccggccGGCGCaGGCGCGCc -3'
miRNA:   3'- -GUUGCUGaa--CAuc-----CCGCG-CCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 18512 0.68 0.724423
Target:  5'- aAACGcCUUGccgaucgGGGGCGCcgucucccccugagGGCGCGCc -3'
miRNA:   3'- gUUGCuGAACa------UCCCGCG--------------CCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 19425 0.66 0.858629
Target:  5'- aGGCGcCggGUGuGGcCGCGGgGCGCGg -3'
miRNA:   3'- gUUGCuGaaCAUcCC-GCGCCgCGCGC- -5'
24622 5' -57.9 NC_005264.1 + 20130 0.66 0.866073
Target:  5'- uCGACGAUgcgGgcaGGCGaUGGCGCGCc -3'
miRNA:   3'- -GUUGCUGaa-CaucCCGC-GCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 20425 0.68 0.743634
Target:  5'- gAugGACUcgucgaagcagcaaUGUGGGcGUagccggcggacaGCGGCGCGCa -3'
miRNA:   3'- gUugCUGA--------------ACAUCC-CG------------CGCCGCGCGc -5'
24622 5' -57.9 NC_005264.1 + 21983 0.67 0.801375
Target:  5'- gCAGuCGGCcUGgcGcaagcgaaaGGCGCGGCGCGUa -3'
miRNA:   3'- -GUU-GCUGaACauC---------CCGCGCCGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.